Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RAB11FIP4 (RAB11 family interacting protein 4)

Identity

Alias (NCBI)FIP4-Rab11
RAB11-FIP4
HGNC (Hugo) RAB11FIP4
HGNC Alias symbRAB11-FIP4
KIAA1821
MGC11316
FLJ00131
HGNC Previous nameRAB11 family interacting protein 4 (class II)
LocusID (NCBI) 84440
Atlas_Id 55694
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 31391675 and ends at 31538211 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AUTS2 (7q11.22) / RAB11FIP4 (17q11.2)CILP (15q22.31) / RAB11FIP4 (17q11.2)NF1 (17q11.2) / RAB11FIP4 (17q11.2)
PLBD2 (12q24.13) / RAB11FIP4 (17q11.2)RAB11FIP4 (17q11.2) / NF1 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RAB11FIP4   30267
Cards
Entrez_Gene (NCBI)RAB11FIP4    RAB11 family interacting protein 4
AliasesFIP4-Rab11; RAB11-FIP4
GeneCards (Weizmann)RAB11FIP4
Ensembl hg19 (Hinxton)ENSG00000131242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131242 [Gene_View]  ENSG00000131242 [Sequence]  chr17:31391675-31538211 [Contig_View]  RAB11FIP4 [Vega]
ICGC DataPortalENSG00000131242
TCGA cBioPortalRAB11FIP4
AceView (NCBI)RAB11FIP4
Genatlas (Paris)RAB11FIP4
SOURCE (Princeton)RAB11FIP4
Genetics Home Reference (NIH)RAB11FIP4
Genomic and cartography
GoldenPath hg38 (UCSC)RAB11FIP4  -     chr17:31391675-31538211 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB11FIP4  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathRAB11FIP4 - 17q11.2 [CytoView hg19]  RAB11FIP4 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000131242
Genome Data Viewer NCBIRAB11FIP4 [Mapview hg19]  
OMIM611999   
Gene and transcription
Genbank (Entrez)AB058724 AJ314646 AK055019 AK074060 AK074341
RefSeq transcript (Entrez)NM_001303542 NM_001346747 NM_001346748 NM_001346749 NM_032932
Consensus coding sequences : CCDS (NCBI)RAB11FIP4
Gene ExpressionRAB11FIP4 [ NCBI-GEO ]   RAB11FIP4 [ EBI - ARRAY_EXPRESS ]   RAB11FIP4 [ SEEK ]   RAB11FIP4 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB11FIP4 [ Firebrowse - Broad ]
GenevisibleExpression of RAB11FIP4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84440
GTEX Portal (Tissue expression)RAB11FIP4
Human Protein AtlasENSG00000131242-RAB11FIP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YS3
PhosPhoSitePlusQ86YS3
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)    FIP_RBD (PS51511)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom    FIP-RBD_C_sf    Rab-bd_FIP-RBD   
Domain families : Pfam (Sanger)RBD-FIP (PF09457)   
Domain families : Pfam (NCBI)pfam09457   
Conserved Domain (NCBI)RAB11FIP4
SuperfamilyQ86YS3
AlphaFold pdb e-kbQ86YS3   
Human Protein Atlas [tissue]ENSG00000131242-RAB11FIP4 [tissue]
HPRD11466
Protein Interaction databases
DIP (DOE-UCLA)Q86YS3
IntAct (EBI)Q86YS3
BioGRIDRAB11FIP4
STRING (EMBL)RAB11FIP4
ZODIACRAB11FIP4
Ontologies - Pathways
QuickGOQ86YS3
Ontology : AmiGOcalcium ion binding  protein binding  extracellular space  endosome  centrosome  spindle  endocytic vesicle  endocytic vesicle  midbody  midbody  small GTPase binding  cleavage furrow  cleavage furrow  endocytic recycling  regulation of cytokinesis  regulation of cytokinesis  protein homodimerization activity  recycling endosome membrane  recycling endosome membrane  
Ontology : EGO-EBIcalcium ion binding  protein binding  extracellular space  endosome  centrosome  spindle  endocytic vesicle  endocytic vesicle  midbody  midbody  small GTPase binding  cleavage furrow  cleavage furrow  endocytic recycling  regulation of cytokinesis  regulation of cytokinesis  protein homodimerization activity  recycling endosome membrane  recycling endosome membrane  
Pathways : KEGGEndocytosis   
NDEx NetworkRAB11FIP4
Atlas of Cancer Signalling NetworkRAB11FIP4
Wikipedia pathwaysRAB11FIP4
Orthology - Evolution
OrthoDB84440
GeneTree (enSembl)ENSG00000131242
Phylogenetic Trees/Animal Genes : TreeFamRAB11FIP4
Homologs : HomoloGeneRAB11FIP4
Homology/Alignments : Family Browser (UCSC)RAB11FIP4
Gene fusions - Rearrangements
Fusion : QuiverRAB11FIP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB11FIP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB11FIP4
dbVarRAB11FIP4
ClinVarRAB11FIP4
MonarchRAB11FIP4
1000_GenomesRAB11FIP4 
Exome Variant ServerRAB11FIP4
GNOMAD BrowserENSG00000131242
Varsome BrowserRAB11FIP4
ACMGRAB11FIP4 variants
VarityQ86YS3
Genomic Variants (DGV)RAB11FIP4 [DGVbeta]
DECIPHERRAB11FIP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB11FIP4 
Mutations
ICGC Data PortalRAB11FIP4 
TCGA Data PortalRAB11FIP4 
Broad Tumor PortalRAB11FIP4
OASIS PortalRAB11FIP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB11FIP4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB11FIP4
Mutations and Diseases : HGMDRAB11FIP4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRAB11FIP4
DgiDB (Drug Gene Interaction Database)RAB11FIP4
DoCM (Curated mutations)RAB11FIP4
CIViC (Clinical Interpretations of Variants in Cancer)RAB11FIP4
Cancer3DRAB11FIP4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611999   
Orphanet
DisGeNETRAB11FIP4
MedgenRAB11FIP4
Genetic Testing Registry RAB11FIP4
NextProtQ86YS3 [Medical]
GENETestsRAB11FIP4
Target ValidationRAB11FIP4
Huge Navigator RAB11FIP4 [HugePedia]
ClinGenRAB11FIP4
Clinical trials, drugs, therapy
MyCancerGenomeRAB11FIP4
Protein Interactions : CTDRAB11FIP4
Pharm GKB GenePA134978007
PharosQ86YS3
Clinical trialRAB11FIP4
Miscellaneous
canSAR (ICR)RAB11FIP4
HarmonizomeRAB11FIP4
DataMed IndexRAB11FIP4
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRAB11FIP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:27:44 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.