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RAB11FIP4 (RAB11 family interacting protein 4)

Identity

Alias_namesRAB11 family interacting protein 4 (class II)
Alias_symbol (synonym)RAB11-FIP4
KIAA1821
MGC11316
FLJ00131
Other aliasFIP4-Rab11
HGNC (Hugo) RAB11FIP4
LocusID (NCBI) 84440
Atlas_Id 55694
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 31488001 and ends at 31538217 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AUTS2 (7q11.22) / RAB11FIP4 (17q11.2)CILP (15q22.31) / RAB11FIP4 (17q11.2)NF1 (17q11.2) / RAB11FIP4 (17q11.2)
PLBD2 (12q24.13) / RAB11FIP4 (17q11.2)RAB11FIP4 (17q11.2) / NF1 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB11FIP4   30267
Cards
Entrez_Gene (NCBI)RAB11FIP4  84440  RAB11 family interacting protein 4
AliasesFIP4-Rab11; RAB11-FIP4
GeneCards (Weizmann)RAB11FIP4
Ensembl hg19 (Hinxton)ENSG00000131242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131242 [Gene_View]  chr17:31488001-31538217 [Contig_View]  RAB11FIP4 [Vega]
ICGC DataPortalENSG00000131242
TCGA cBioPortalRAB11FIP4
AceView (NCBI)RAB11FIP4
Genatlas (Paris)RAB11FIP4
WikiGenes84440
SOURCE (Princeton)RAB11FIP4
Genetics Home Reference (NIH)RAB11FIP4
Genomic and cartography
GoldenPath hg38 (UCSC)RAB11FIP4  -     chr17:31488001-31538217 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB11FIP4  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblRAB11FIP4 - 17q11.2 [CytoView hg19]  RAB11FIP4 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIRAB11FIP4 [Mapview hg19]  RAB11FIP4 [Mapview hg38]
OMIM611999   
Gene and transcription
Genbank (Entrez)AB058724 AJ314646 AK055019 AK074060 AK074341
RefSeq transcript (Entrez)NM_001303542 NM_001346747 NM_001346748 NM_001346749 NM_032932
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB11FIP4
Cluster EST : UnigeneHs.406788 [ NCBI ]
CGAP (NCI)Hs.406788
Alternative Splicing GalleryENSG00000131242
Gene ExpressionRAB11FIP4 [ NCBI-GEO ]   RAB11FIP4 [ EBI - ARRAY_EXPRESS ]   RAB11FIP4 [ SEEK ]   RAB11FIP4 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB11FIP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84440
GTEX Portal (Tissue expression)RAB11FIP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YS3
Splice isoforms : SwissVarQ86YS3
PhosPhoSitePlusQ86YS3
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)    FIP_RBD (PS51511)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom    Rab-bd_FIP-RBD   
Domain families : Pfam (Sanger)RBD-FIP (PF09457)   
Domain families : Pfam (NCBI)pfam09457   
Conserved Domain (NCBI)RAB11FIP4
DMDM Disease mutations84440
Blocks (Seattle)RAB11FIP4
SuperfamilyQ86YS3
Human Protein AtlasENSG00000131242
Peptide AtlasQ86YS3
HPRD11466
IPIIPI00174771   IPI00556584   IPI00152805   
Protein Interaction databases
DIP (DOE-UCLA)Q86YS3
IntAct (EBI)Q86YS3
FunCoupENSG00000131242
BioGRIDRAB11FIP4
STRING (EMBL)RAB11FIP4
ZODIACRAB11FIP4
Ontologies - Pathways
QuickGOQ86YS3
Ontology : AmiGOcytokinesis  neural retina development  calcium ion binding  protein binding  extracellular space  endosome  microtubule organizing center  spindle  transport  viral process  Rab GTPase binding  endocytic vesicle  ADP-ribosylation factor binding  midbody  cleavage furrow  protein homodimerization activity  intracellular membrane-bounded organelle  perinuclear region of cytoplasm  recycling endosome membrane  positive regulation of G1 to G0 transition  
Ontology : EGO-EBIcytokinesis  neural retina development  calcium ion binding  protein binding  extracellular space  endosome  microtubule organizing center  spindle  transport  viral process  Rab GTPase binding  endocytic vesicle  ADP-ribosylation factor binding  midbody  cleavage furrow  protein homodimerization activity  intracellular membrane-bounded organelle  perinuclear region of cytoplasm  recycling endosome membrane  positive regulation of G1 to G0 transition  
Pathways : KEGGEndocytosis   
NDEx NetworkRAB11FIP4
Atlas of Cancer Signalling NetworkRAB11FIP4
Wikipedia pathwaysRAB11FIP4
Orthology - Evolution
OrthoDB84440
GeneTree (enSembl)ENSG00000131242
Phylogenetic Trees/Animal Genes : TreeFamRAB11FIP4
HOVERGENQ86YS3
HOGENOMQ86YS3
Homologs : HomoloGeneRAB11FIP4
Homology/Alignments : Family Browser (UCSC)RAB11FIP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB11FIP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB11FIP4
dbVarRAB11FIP4
ClinVarRAB11FIP4
1000_GenomesRAB11FIP4 
Exome Variant ServerRAB11FIP4
ExAC (Exome Aggregation Consortium)RAB11FIP4 (select the gene name)
Genetic variants : HAPMAP84440
Genomic Variants (DGV)RAB11FIP4 [DGVbeta]
DECIPHERRAB11FIP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB11FIP4 
Mutations
ICGC Data PortalRAB11FIP4 
TCGA Data PortalRAB11FIP4 
Broad Tumor PortalRAB11FIP4
OASIS PortalRAB11FIP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB11FIP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB11FIP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB11FIP4
DgiDB (Drug Gene Interaction Database)RAB11FIP4
DoCM (Curated mutations)RAB11FIP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB11FIP4 (select a term)
intoGenRAB11FIP4
Cancer3DRAB11FIP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611999   
Orphanet
MedgenRAB11FIP4
Genetic Testing Registry RAB11FIP4
NextProtQ86YS3 [Medical]
TSGene84440
GENETestsRAB11FIP4
Huge Navigator RAB11FIP4 [HugePedia]
snp3D : Map Gene to Disease84440
BioCentury BCIQRAB11FIP4
ClinGenRAB11FIP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84440
Chemical/Pharm GKB GenePA134978007
Clinical trialRAB11FIP4
Miscellaneous
canSAR (ICR)RAB11FIP4 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB11FIP4
EVEXRAB11FIP4
GoPubMedRAB11FIP4
iHOPRAB11FIP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:33:43 CEST 2017

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