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RAB11FIP5 (RAB11 family interacting protein 5 (class I))

Identity

Alias_namesRAB11 family interacting protein 5 (class I)
Alias_symbol (synonym)GAF1
KIAA0857
RIP11
pp75
Other alias
HGNC (Hugo) RAB11FIP5
LocusID (NCBI) 26056
Atlas_Id 50284
Location 2p13.2  [Link to chromosome band 2p13]
Location_base_pair Starts at 73300510 and ends at 73340146 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB11FIP5   24845
Cards
Entrez_Gene (NCBI)RAB11FIP5  26056  RAB11 family interacting protein 5 (class I)
AliasesGAF1; RIP11; pp75
GeneCards (Weizmann)RAB11FIP5
Ensembl hg19 (Hinxton)ENSG00000135631 [Gene_View]  chr2:73300510-73340146 [Contig_View]  RAB11FIP5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135631 [Gene_View]  chr2:73300510-73340146 [Contig_View]  RAB11FIP5 [Vega]
ICGC DataPortalENSG00000135631
TCGA cBioPortalRAB11FIP5
AceView (NCBI)RAB11FIP5
Genatlas (Paris)RAB11FIP5
WikiGenes26056
SOURCE (Princeton)RAB11FIP5
Genetics Home Reference (NIH)RAB11FIP5
Genomic and cartography
GoldenPath hg19 (UCSC)RAB11FIP5  -     chr2:73300510-73340146 -  2p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB11FIP5  -     2p13.2   [Description]    (hg38-Dec_2013)
EnsemblRAB11FIP5 - 2p13.2 [CytoView hg19]  RAB11FIP5 - 2p13.2 [CytoView hg38]
Mapping of homologs : NCBIRAB11FIP5 [Mapview hg19]  RAB11FIP5 [Mapview hg38]
OMIM605536   
Gene and transcription
Genbank (Entrez)AB020664 AF153085 AF334812 AK023823 AK024727
RefSeq transcript (Entrez)NM_015470
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)RAB11FIP5
Cluster EST : UnigeneHs.24557 [ NCBI ]
CGAP (NCI)Hs.24557
Alternative Splicing GalleryENSG00000135631
Gene ExpressionRAB11FIP5 [ NCBI-GEO ]   RAB11FIP5 [ EBI - ARRAY_EXPRESS ]   RAB11FIP5 [ SEEK ]   RAB11FIP5 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB11FIP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26056
GTEX Portal (Tissue expression)RAB11FIP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXF6
Splice isoforms : SwissVarQ9BXF6
PhosPhoSitePlusQ9BXF6
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    FIP_RBD (PS51511)   
Domains : Interpro (EBI)C2_dom    Rab-bd_FIP-RBD   
Domain families : Pfam (Sanger)C2 (PF00168)    RBD-FIP (PF09457)   
Domain families : Pfam (NCBI)pfam00168    pfam09457   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)RAB11FIP5
DMDM Disease mutations26056
Blocks (Seattle)RAB11FIP5
SuperfamilyQ9BXF6
Human Protein AtlasENSG00000135631
Peptide AtlasQ9BXF6
HPRD16117
IPIIPI00022033   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXF6
IntAct (EBI)Q9BXF6
FunCoupENSG00000135631
BioGRIDRAB11FIP5
STRING (EMBL)RAB11FIP5
ZODIACRAB11FIP5
Ontologies - Pathways
QuickGOQ9BXF6
Ontology : AmiGOGolgi membrane  protein binding  mitochondrial outer membrane  early endosome  early endosome  Golgi apparatus  microtubule organizing center  Rab GTPase binding  secretory granule  transport vesicle membrane  early endosome membrane  insulin secretion involved in cellular response to glucose stimulus  gamma-tubulin binding  intracellular membrane-bounded organelle  regulated exocytosis  regulated exocytosis  recycling endosome  recycling endosome membrane  negative regulation of adiponectin secretion  cellular response to acidic pH  regulation of protein localization to cell surface  
Ontology : EGO-EBIGolgi membrane  protein binding  mitochondrial outer membrane  early endosome  early endosome  Golgi apparatus  microtubule organizing center  Rab GTPase binding  secretory granule  transport vesicle membrane  early endosome membrane  insulin secretion involved in cellular response to glucose stimulus  gamma-tubulin binding  intracellular membrane-bounded organelle  regulated exocytosis  regulated exocytosis  recycling endosome  recycling endosome membrane  negative regulation of adiponectin secretion  cellular response to acidic pH  regulation of protein localization to cell surface  
Pathways : KEGGEndocytosis   
NDEx NetworkRAB11FIP5
Atlas of Cancer Signalling NetworkRAB11FIP5
Wikipedia pathwaysRAB11FIP5
Orthology - Evolution
OrthoDB26056
GeneTree (enSembl)ENSG00000135631
Phylogenetic Trees/Animal Genes : TreeFamRAB11FIP5
HOVERGENQ9BXF6
HOGENOMQ9BXF6
Homologs : HomoloGeneRAB11FIP5
Homology/Alignments : Family Browser (UCSC)RAB11FIP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB11FIP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB11FIP5
dbVarRAB11FIP5
ClinVarRAB11FIP5
1000_GenomesRAB11FIP5 
Exome Variant ServerRAB11FIP5
ExAC (Exome Aggregation Consortium)RAB11FIP5 (select the gene name)
Genetic variants : HAPMAP26056
Genomic Variants (DGV)RAB11FIP5 [DGVbeta]
DECIPHER (Syndromes)2:73300510-73340146  ENSG00000135631
CONAN: Copy Number AnalysisRAB11FIP5 
Mutations
ICGC Data PortalRAB11FIP5 
TCGA Data PortalRAB11FIP5 
Broad Tumor PortalRAB11FIP5
OASIS PortalRAB11FIP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB11FIP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB11FIP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RAB11FIP5
DgiDB (Drug Gene Interaction Database)RAB11FIP5
DoCM (Curated mutations)RAB11FIP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB11FIP5 (select a term)
intoGenRAB11FIP5
Cancer3DRAB11FIP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605536   
Orphanet
MedgenRAB11FIP5
Genetic Testing Registry RAB11FIP5
NextProtQ9BXF6 [Medical]
TSGene26056
GENETestsRAB11FIP5
Huge Navigator RAB11FIP5 [HugePedia]
snp3D : Map Gene to Disease26056
BioCentury BCIQRAB11FIP5
ClinGenRAB11FIP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26056
Chemical/Pharm GKB GenePA134971129
Clinical trialRAB11FIP5
Miscellaneous
canSAR (ICR)RAB11FIP5 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB11FIP5
EVEXRAB11FIP5
GoPubMedRAB11FIP5
iHOPRAB11FIP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:25 CEST 2017

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