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RAB13 (RAB13, member RAS oncogene family)

Identity

Other aliasGIG4
HGNC (Hugo) RAB13
LocusID (NCBI) 5872
Atlas_Id 41958
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153981617 and ends at 153985366 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHTOP (1q21.3) / RAB13 (1q21.3)COPS7B (2q37.1) / RAB13 (1q21.3)LRP10 (14q11.2) / RAB13 (1q21.3)
PAPSS1 (4q25) / RAB13 (1q21.3)RAB13 (1q21.3) / CDH23 (10q22.1)SLC39A1 (1q21.3) / RAB13 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB13   9762
Cards
Entrez_Gene (NCBI)RAB13  5872  RAB13, member RAS oncogene family
AliasesGIG4
GeneCards (Weizmann)RAB13
Ensembl hg19 (Hinxton)ENSG00000143545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143545 [Gene_View]  chr1:153981617-153985366 [Contig_View]  RAB13 [Vega]
ICGC DataPortalENSG00000143545
TCGA cBioPortalRAB13
AceView (NCBI)RAB13
Genatlas (Paris)RAB13
WikiGenes5872
SOURCE (Princeton)RAB13
Genetics Home Reference (NIH)RAB13
Genomic and cartography
GoldenPath hg38 (UCSC)RAB13  -     chr1:153981617-153985366 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB13  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblRAB13 - 1q21.3 [CytoView hg19]  RAB13 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIRAB13 [Mapview hg19]  RAB13 [Mapview hg38]
OMIM602672   
Gene and transcription
Genbank (Entrez)AF498948 AK128675 AK291580 AM392651 AM393152
RefSeq transcript (Entrez)NM_001272038 NM_002870
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB13
Cluster EST : UnigeneHs.151536 [ NCBI ]
CGAP (NCI)Hs.151536
Alternative Splicing GalleryENSG00000143545
Gene ExpressionRAB13 [ NCBI-GEO ]   RAB13 [ EBI - ARRAY_EXPRESS ]   RAB13 [ SEEK ]   RAB13 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5872
GTEX Portal (Tissue expression)RAB13
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51153   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51153  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51153
Splice isoforms : SwissVarP51153
PhosPhoSitePlusP51153
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB13
DMDM Disease mutations5872
Blocks (Seattle)RAB13
SuperfamilyP51153
Human Protein AtlasENSG00000143545
Peptide AtlasP51153
HPRD04053
IPIIPI00016373   
Protein Interaction databases
DIP (DOE-UCLA)P51153
IntAct (EBI)P51153
FunCoupENSG00000143545
BioGRIDRAB13
STRING (EMBL)RAB13
ZODIACRAB13
Ontologies - Pathways
QuickGOP51153
Ontology : AmiGOGTPase activity  protein binding  GTP binding  Golgi apparatus  trans-Golgi network  cytosol  cytosol  plasma membrane  bicellular tight junction  protein kinase A signaling  protein transport  endosomal transport  lateral plasma membrane  lamellipodium  cell junction  endocytic vesicle  cytoplasmic vesicle membrane  cortical actin cytoskeleton organization  neuron projection development  cytoplasmic vesicle  endocytic recycling  insulin-responsive compartment  cellular response to insulin stimulus  protein kinase A catalytic subunit binding  endothelial cell chemotaxis  neuron projection  trans-Golgi network to recycling endosome transport  recycling endosome  recycling endosome membrane  membrane organization  extracellular exosome  bicellular tight junction assembly  establishment of protein localization to plasma membrane  establishment of Sertoli cell barrier  protein localization to cell leading edge  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  Golgi apparatus  trans-Golgi network  cytosol  cytosol  plasma membrane  bicellular tight junction  protein kinase A signaling  protein transport  endosomal transport  lateral plasma membrane  lamellipodium  cell junction  endocytic vesicle  cytoplasmic vesicle membrane  cortical actin cytoskeleton organization  neuron projection development  cytoplasmic vesicle  endocytic recycling  insulin-responsive compartment  cellular response to insulin stimulus  protein kinase A catalytic subunit binding  endothelial cell chemotaxis  neuron projection  trans-Golgi network to recycling endosome transport  recycling endosome  recycling endosome membrane  membrane organization  extracellular exosome  bicellular tight junction assembly  establishment of protein localization to plasma membrane  establishment of Sertoli cell barrier  protein localization to cell leading edge  
Pathways : KEGGTight junction   
NDEx NetworkRAB13
Atlas of Cancer Signalling NetworkRAB13
Wikipedia pathwaysRAB13
Orthology - Evolution
OrthoDB5872
GeneTree (enSembl)ENSG00000143545
Phylogenetic Trees/Animal Genes : TreeFamRAB13
HOVERGENP51153
HOGENOMP51153
Homologs : HomoloGeneRAB13
Homology/Alignments : Family Browser (UCSC)RAB13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB13
dbVarRAB13
ClinVarRAB13
1000_GenomesRAB13 
Exome Variant ServerRAB13
ExAC (Exome Aggregation Consortium)RAB13 (select the gene name)
Genetic variants : HAPMAP5872
Genomic Variants (DGV)RAB13 [DGVbeta]
DECIPHERRAB13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB13 
Mutations
ICGC Data PortalRAB13 
TCGA Data PortalRAB13 
Broad Tumor PortalRAB13
OASIS PortalRAB13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB13
DgiDB (Drug Gene Interaction Database)RAB13
DoCM (Curated mutations)RAB13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB13 (select a term)
intoGenRAB13
Cancer3DRAB13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602672   
Orphanet
MedgenRAB13
Genetic Testing Registry RAB13
NextProtP51153 [Medical]
TSGene5872
GENETestsRAB13
Target ValidationRAB13
Huge Navigator RAB13 [HugePedia]
snp3D : Map Gene to Disease5872
BioCentury BCIQRAB13
ClinGenRAB13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5872
Chemical/Pharm GKB GenePA34103
Clinical trialRAB13
Miscellaneous
canSAR (ICR)RAB13 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB13
EVEXRAB13
GoPubMedRAB13
iHOPRAB13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:12:15 CEST 2017

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