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RAB15 (RAB15, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB15
LocusID (NCBI) 376267
Atlas_Id 43441
Location 14q23.3  [Link to chromosome band 14q23]
Location_base_pair Starts at 64945814 and ends at 64972157 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AL139022.1 () / RAB15 (14q23.3)SPTB (14q23.3) / RAB15 (14q23.3)AL139022.1 RAB15 14q23.3
SPTB 14q23.3 / RAB15 14q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB15   20150
Cards
Entrez_Gene (NCBI)RAB15  376267  RAB15, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB15
Ensembl hg19 (Hinxton)ENSG00000139998 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139998 [Gene_View]  chr14:64945814-64972157 [Contig_View]  RAB15 [Vega]
ICGC DataPortalENSG00000139998
TCGA cBioPortalRAB15
AceView (NCBI)RAB15
Genatlas (Paris)RAB15
WikiGenes376267
SOURCE (Princeton)RAB15
Genetics Home Reference (NIH)RAB15
Genomic and cartography
GoldenPath hg38 (UCSC)RAB15  -     chr14:64945814-64972157 -  14q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB15  -     14q23.3   [Description]    (hg19-Feb_2009)
EnsemblRAB15 - 14q23.3 [CytoView hg19]  RAB15 - 14q23.3 [CytoView hg38]
Mapping of homologs : NCBIRAB15 [Mapview hg19]  RAB15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB672631 AB672632 AB678452 AB678453 AI096837
RefSeq transcript (Entrez)NM_001308154 NM_001330182 NM_198686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB15
Cluster EST : UnigeneHs.512492 [ NCBI ]
CGAP (NCI)Hs.512492
Alternative Splicing GalleryENSG00000139998
Gene ExpressionRAB15 [ NCBI-GEO ]   RAB15 [ EBI - ARRAY_EXPRESS ]   RAB15 [ SEEK ]   RAB15 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)376267
GTEX Portal (Tissue expression)RAB15
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59190   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59190  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59190
Splice isoforms : SwissVarP59190
PhosPhoSitePlusP59190
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB15
DMDM Disease mutations376267
Blocks (Seattle)RAB15
SuperfamilyP59190
Human Protein AtlasENSG00000139998
Peptide AtlasP59190
HPRD11467
IPIIPI00394882   IPI00383449   IPI01026166   
Protein Interaction databases
DIP (DOE-UCLA)P59190
IntAct (EBI)P59190
FunCoupENSG00000139998
BioGRIDRAB15
STRING (EMBL)RAB15
ZODIACRAB15
Ontologies - Pathways
QuickGOP59190
Ontology : AmiGOGTPase activity  protein binding  GTP binding  cytoplasm  plasma membrane  cilium  vesicle docking involved in exocytosis  protein secretion  endosome membrane  perinuclear region of cytoplasm  extracellular exosome  positive regulation of regulated secretory pathway  positive regulation of regulated secretory pathway  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  cytoplasm  plasma membrane  cilium  vesicle docking involved in exocytosis  protein secretion  endosome membrane  perinuclear region of cytoplasm  extracellular exosome  positive regulation of regulated secretory pathway  positive regulation of regulated secretory pathway  
NDEx NetworkRAB15
Atlas of Cancer Signalling NetworkRAB15
Wikipedia pathwaysRAB15
Orthology - Evolution
OrthoDB376267
GeneTree (enSembl)ENSG00000139998
Phylogenetic Trees/Animal Genes : TreeFamRAB15
HOVERGENP59190
HOGENOMP59190
Homologs : HomoloGeneRAB15
Homology/Alignments : Family Browser (UCSC)RAB15
Gene fusions - Rearrangements
Fusion : MitelmanSPTB/RAB15 [14q23.3/14q23.3]  [t(14;14)(q23;q23)]  
Fusion: TCGAAL139022.1 RAB15 14q23.3 BRCA
Fusion: TCGASPTB 14q23.3 RAB15 14q23.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB15
dbVarRAB15
ClinVarRAB15
1000_GenomesRAB15 
Exome Variant ServerRAB15
ExAC (Exome Aggregation Consortium)RAB15 (select the gene name)
Genetic variants : HAPMAP376267
Genomic Variants (DGV)RAB15 [DGVbeta]
DECIPHERRAB15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB15 
Mutations
ICGC Data PortalRAB15 
TCGA Data PortalRAB15 
Broad Tumor PortalRAB15
OASIS PortalRAB15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB15
DgiDB (Drug Gene Interaction Database)RAB15
DoCM (Curated mutations)RAB15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB15 (select a term)
intoGenRAB15
Cancer3DRAB15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB15
Genetic Testing Registry RAB15
NextProtP59190 [Medical]
TSGene376267
GENETestsRAB15
Target ValidationRAB15
Huge Navigator RAB15 [HugePedia]
snp3D : Map Gene to Disease376267
BioCentury BCIQRAB15
ClinGenRAB15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD376267
Chemical/Pharm GKB GenePA134901572
Clinical trialRAB15
Miscellaneous
canSAR (ICR)RAB15 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB15
EVEXRAB15
GoPubMedRAB15
iHOPRAB15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:04:59 CEST 2017

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