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RAB17 (RAB17, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB17
LocusID (NCBI) 64284
Atlas_Id 41960
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 238482965 and ends at 238499769 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB17   16523
Cards
Entrez_Gene (NCBI)RAB17  64284  RAB17, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB17
Ensembl hg19 (Hinxton)ENSG00000124839 [Gene_View]  chr2:238482965-238499769 [Contig_View]  RAB17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000124839 [Gene_View]  chr2:238482965-238499769 [Contig_View]  RAB17 [Vega]
ICGC DataPortalENSG00000124839
TCGA cBioPortalRAB17
AceView (NCBI)RAB17
Genatlas (Paris)RAB17
WikiGenes64284
SOURCE (Princeton)RAB17
Genetics Home Reference (NIH)RAB17
Genomic and cartography
GoldenPath hg19 (UCSC)RAB17  -     chr2:238482965-238499769 -  2q37.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB17  -     2q37.3   [Description]    (hg38-Dec_2013)
EnsemblRAB17 - 2q37.3 [CytoView hg19]  RAB17 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIRAB17 [Mapview hg19]  RAB17 [Mapview hg38]
OMIM602206   
Gene and transcription
Genbank (Entrez)AK022600 AK225423 AL136645 AM392800 BC000929
RefSeq transcript (Entrez)NM_022449
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929306
Consensus coding sequences : CCDS (NCBI)RAB17
Cluster EST : UnigeneHs.44278 [ NCBI ]
CGAP (NCI)Hs.44278
Alternative Splicing GalleryENSG00000124839
Gene ExpressionRAB17 [ NCBI-GEO ]   RAB17 [ EBI - ARRAY_EXPRESS ]   RAB17 [ SEEK ]   RAB17 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64284
GTEX Portal (Tissue expression)RAB17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0T7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0T7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0T7
Splice isoforms : SwissVarQ9H0T7
PhosPhoSitePlusQ9H0T7
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
Conserved Domain (NCBI)RAB17
DMDM Disease mutations64284
Blocks (Seattle)RAB17
SuperfamilyQ9H0T7
Human Protein AtlasENSG00000124839
Peptide AtlasQ9H0T7
HPRD11468
IPIIPI00007866   IPI00917236   IPI00917089   IPI00916958   IPI00917630   IPI00917496   IPI00917363   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0T7
IntAct (EBI)Q9H0T7
FunCoupENSG00000124839
BioGRIDRAB17
STRING (EMBL)RAB17
ZODIACRAB17
Ontologies - Pathways
QuickGOQ9H0T7
Ontology : AmiGOimmunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor  GTPase activity  protein binding  GTP binding  intracellular  early endosome  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  basolateral plasma membrane  apical plasma membrane  GDP binding  regulation of endocytosis  endocytic vesicle  dendrite  establishment of melanosome localization  melanosome transport  endocytic recycling  endocytic recycling  cilium assembly  melanosome  neuronal cell body  transcytosis  filopodium assembly  regulation of dendrite development  regulation of filopodium assembly  regulation of synapse assembly  recycling endosome  recycling endosome membrane  recycling endosome membrane  extracellular exosome  
Ontology : EGO-EBIimmunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor  GTPase activity  protein binding  GTP binding  intracellular  early endosome  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  basolateral plasma membrane  apical plasma membrane  GDP binding  regulation of endocytosis  endocytic vesicle  dendrite  establishment of melanosome localization  melanosome transport  endocytic recycling  endocytic recycling  cilium assembly  melanosome  neuronal cell body  transcytosis  filopodium assembly  regulation of dendrite development  regulation of filopodium assembly  regulation of synapse assembly  recycling endosome  recycling endosome membrane  recycling endosome membrane  extracellular exosome  
NDEx NetworkRAB17
Atlas of Cancer Signalling NetworkRAB17
Wikipedia pathwaysRAB17
Orthology - Evolution
OrthoDB64284
GeneTree (enSembl)ENSG00000124839
Phylogenetic Trees/Animal Genes : TreeFamRAB17
HOVERGENQ9H0T7
HOGENOMQ9H0T7
Homologs : HomoloGeneRAB17
Homology/Alignments : Family Browser (UCSC)RAB17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB17
dbVarRAB17
ClinVarRAB17
1000_GenomesRAB17 
Exome Variant ServerRAB17
ExAC (Exome Aggregation Consortium)RAB17 (select the gene name)
Genetic variants : HAPMAP64284
Genomic Variants (DGV)RAB17 [DGVbeta]
DECIPHER (Syndromes)2:238482965-238499769  ENSG00000124839
CONAN: Copy Number AnalysisRAB17 
Mutations
ICGC Data PortalRAB17 
TCGA Data PortalRAB17 
Broad Tumor PortalRAB17
OASIS PortalRAB17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB17
DgiDB (Drug Gene Interaction Database)RAB17
DoCM (Curated mutations)RAB17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB17 (select a term)
intoGenRAB17
Cancer3DRAB17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602206   
Orphanet
MedgenRAB17
Genetic Testing Registry RAB17
NextProtQ9H0T7 [Medical]
TSGene64284
GENETestsRAB17
Huge Navigator RAB17 [HugePedia]
snp3D : Map Gene to Disease64284
BioCentury BCIQRAB17
ClinGenRAB17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64284
Chemical/Pharm GKB GenePA34105
Clinical trialRAB17
Miscellaneous
canSAR (ICR)RAB17 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB17
EVEXRAB17
GoPubMedRAB17
iHOPRAB17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:26 CEST 2017

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