Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RAB18 (RAB18, member RAS oncogene family)

Identity

Other namesRAB18LI1
HGNC (Hugo) RAB18
Location 10p12.1
Location_base_pair Starts at 27817444 and ends at 27828758 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB18   14244
Entrez_Gene (NCBI)RAB18  22931  RAB18, member RAS oncogene family
Cards
GeneCards (Weizmann)RAB18
Ensembl (Hinxton)ENSG00000099246 [Gene_View]  RAB18 [Vega]
AceView (NCBI)RAB18
Genatlas (Paris)RAB18
euGene (Indiana)22931
SOURCE (Stanford)NM_021252
Gene Expression (Array Express) ENSG00000099246
Genomic and cartography
GoldenPath (UCSC)RAB18  -  10p12.1   chr10:27817444-27828758 +  10p12.1   [Description]    (hg19-Feb_2009)
EnsemblRAB18 - 10p12.1 [CytoView]
Mapping of homologs : NCBIRAB18 [Mapview]
OMIM602207   
Gene and transcription
Gene : Genbank (Entrez)AB209698 AF087860 AF136974 AF137372 AF498950
Reference sequence (RefSeq transcript) :SRSNM_021252
Reference transcript : EntrezNM_021252
RefSeq genomic : SRSAC_000053 AC_000142 NC_000010 NT_008705 NW_001837931 NW_924584
RefSeq genomic : EntrezAC_000053 AC_000142 NC_000010 NT_008705 NW_001837931 NW_924584
Consensus coding sequences : CCDS NCBIRAB18
Cluster EST : UnigeneHs.406799 [ SRS ] Hs.406799 [ NCBI ]
Alternative Splicing : Fast-db (Paris)6533
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9NP72 (SRS) Q9NP72 (Expasy) Q9NP72 (Uniprot)
With graphics : InterProQ9NP72
Splice isoforms : VarSplice FASTAQ9NP72(VarSplice FASTA)
Domaine pattern : Prosite (SRS)RAB (PS51419)   
Domain pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (SRS)GTPase_Rab    Rab18    Ras    Ras_GTPase    RNA_pol_sigma_54_int    Small_GTP-bd    Small_GTPase   
Domains : Interpro (EBI)GTPase_Rab    Rab18    Ras    Ras_GTPase    RNA_pol_sigma_54_int    Small_GTP-bd    Small_GTPase   
Related proteins : CluSTrQ9NP72
Domain families : Pfam SRSRas (PF00071)   
Domain families : Pfam SangerRas (PF00071)   
Domain families : Pfam NCBIpfam00071   
Domain families : Smart EMBLRAB (SM00175)  
Blocks (Seattle)Q9NP72
Crystal structure of protein : PDB SRS1X3S   
Crystal structure of protein : PDBSum1X3S   
Crystal structure of protein : IMB1X3S   
Crystal structure of protein : PDB RSDB1X3S   
Human Protein AtlasENSG00000099246
HPRD03731
Protein Interaction databases
DIP (DOE-UCLA)Q9NP72
IntAct (EBI)Q9NP72
FunCoupENSG00000099246
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIRAB18
SNP : GeneSNP UtahRAB18
SNP : HGBaseRAB18
Genetic variants : HAPMAPRAB18
Somatic Mutations in Cancer : COSMICRAB18 
Mutations and Diseases : HGMDRAB18
Hereditary diseases : OMIM602207   
Hereditary diseases : GENETests602207   
Diseases : Genetic AssociationRAB18
General knowledge
Homologs : HomoloGeneRAB18
Homology/Alignments : Family Browser UCSCRAB18
Phylogenetic Trees/Animal Genes : TreeFamRAB18
Chemical/Protein Interactions : CTD22931
Keywords Ontology : AmiGOnucleotide binding  GTPase activity  ATP binding  GTP binding  intracellular  plasma membrane  regulation of transcription, DNA-dependent  endocytosis  small GTPase mediated signal transduction  transcription factor binding  protein transport  
Keywords Ontology : EGO-EBInucleotide binding  GTPase activity  ATP binding  GTP binding  intracellular  plasma membrane  regulation of transcription, DNA-dependent  endocytosis  small GTPase mediated signal transduction  transcription factor binding  protein transport  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesRAB18 Related clones (RZPD - Berlin)
Literature
PubMed26 Pubmed reference(s) in Entrez
PubGeneRAB18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated07-2010Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 31 19:50:19 CEST 2010
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.