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RAB19 (RAB19, member RAS oncogene family)

Identity

Alias_symbol (synonym)RAB19B
Other alias
HGNC (Hugo) RAB19
LocusID (NCBI) 401409
Atlas_Id 47672
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 140404043 and ends at 140426250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB19   19982
Cards
Entrez_Gene (NCBI)RAB19  401409  RAB19, member RAS oncogene family
AliasesRAB19B
GeneCards (Weizmann)RAB19
Ensembl hg19 (Hinxton)ENSG00000146955 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146955 [Gene_View]  chr7:140404043-140426250 [Contig_View]  RAB19 [Vega]
ICGC DataPortalENSG00000146955
TCGA cBioPortalRAB19
AceView (NCBI)RAB19
Genatlas (Paris)RAB19
WikiGenes401409
SOURCE (Princeton)RAB19
Genetics Home Reference (NIH)RAB19
Genomic and cartography
GoldenPath hg38 (UCSC)RAB19  -     chr7:140404043-140426250 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB19  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblRAB19 - 7q34 [CytoView hg19]  RAB19 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIRAB19 [Mapview hg19]  RAB19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF091033 BC140796 BC171745 DN996121 DY655778
RefSeq transcript (Entrez)NM_001008749
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB19
Cluster EST : UnigeneHs.583545 [ NCBI ]
CGAP (NCI)Hs.583545
Alternative Splicing GalleryENSG00000146955
Gene ExpressionRAB19 [ NCBI-GEO ]   RAB19 [ EBI - ARRAY_EXPRESS ]   RAB19 [ SEEK ]   RAB19 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401409
GTEX Portal (Tissue expression)RAB19
Human Protein AtlasENSG00000146955-RAB19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D1S5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D1S5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D1S5
Splice isoforms : SwissVarA4D1S5
PhosPhoSitePlusA4D1S5
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB19
DMDM Disease mutations401409
Blocks (Seattle)RAB19
SuperfamilyA4D1S5
Human Protein Atlas [tissue]ENSG00000146955-RAB19 [tissue]
Peptide AtlasA4D1S5
HPRD17946
IPIIPI00478209   IPI00923598   IPI00946179   
Protein Interaction databases
DIP (DOE-UCLA)A4D1S5
IntAct (EBI)A4D1S5
FunCoupENSG00000146955
BioGRIDRAB19
STRING (EMBL)RAB19
ZODIACRAB19
Ontologies - Pathways
QuickGOA4D1S5
Ontology : AmiGOGTPase activity  GTP binding  endosome  Golgi apparatus  plasma membrane  extracellular exosome  
Ontology : EGO-EBIGTPase activity  GTP binding  endosome  Golgi apparatus  plasma membrane  extracellular exosome  
NDEx NetworkRAB19
Atlas of Cancer Signalling NetworkRAB19
Wikipedia pathwaysRAB19
Orthology - Evolution
OrthoDB401409
GeneTree (enSembl)ENSG00000146955
Phylogenetic Trees/Animal Genes : TreeFamRAB19
HOVERGENA4D1S5
HOGENOMA4D1S5
Homologs : HomoloGeneRAB19
Homology/Alignments : Family Browser (UCSC)RAB19
Gene fusions - Rearrangements
Fusion: Tumor Portal RAB19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB19
dbVarRAB19
ClinVarRAB19
1000_GenomesRAB19 
Exome Variant ServerRAB19
ExAC (Exome Aggregation Consortium)ENSG00000146955
GNOMAD BrowserENSG00000146955
Genetic variants : HAPMAP401409
Genomic Variants (DGV)RAB19 [DGVbeta]
DECIPHERRAB19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB19 
Mutations
ICGC Data PortalRAB19 
TCGA Data PortalRAB19 
Broad Tumor PortalRAB19
OASIS PortalRAB19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB19
DgiDB (Drug Gene Interaction Database)RAB19
DoCM (Curated mutations)RAB19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB19 (select a term)
intoGenRAB19
Cancer3DRAB19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB19
Genetic Testing Registry RAB19
NextProtA4D1S5 [Medical]
TSGene401409
GENETestsRAB19
Target ValidationRAB19
Huge Navigator RAB19 [HugePedia]
snp3D : Map Gene to Disease401409
BioCentury BCIQRAB19
ClinGenRAB19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401409
Chemical/Pharm GKB GenePA162400617
Clinical trialRAB19
Miscellaneous
canSAR (ICR)RAB19 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB19
EVEXRAB19
GoPubMedRAB19
iHOPRAB19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:07:33 CET 2017

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