Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RAB1C (RAB1C, member RAS oncogene family pseudogene)

Identity

Alias_namesRAB1C
Other alias-
HGNC (Hugo) RAB1C
LocusID (NCBI) 441400
Atlas_Id 43091
Location 9p13.2  [Link to chromosome band 9p13]
Location_base_pair Starts at 37636937 and ends at 37637096 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RAB1C   23683
Cards
Entrez_Gene (NCBI)RAB1C  441400  RAB1C, member RAS oncogene family pseudogene
Aliases
GeneCards (Weizmann)RAB1C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:37636937-37637096 [Contig_View]  RAB1C [Vega]
TCGA cBioPortalRAB1C
AceView (NCBI)RAB1C
Genatlas (Paris)RAB1C
WikiGenes441400
SOURCE (Princeton)RAB1C
Genetics Home Reference (NIH)RAB1C
Genomic and cartography
GoldenPath hg38 (UCSC)RAB1C  -     chr9:37636937-37637096 -  9p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB1C  -     9p13.2   [Description]    (hg19-Feb_2009)
EnsemblRAB1C - 9p13.2 [CytoView hg19]  RAB1C - 9p13.2 [CytoView hg38]
Mapping of homologs : NCBIRAB1C [Mapview hg19]  RAB1C [Mapview hg38]
Gene and transcription
Genbank (Entrez)U66622
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB1C
Cluster EST : UnigeneHs.651788 [ NCBI ]
CGAP (NCI)Hs.651788
Gene ExpressionRAB1C [ NCBI-GEO ]   RAB1C [ EBI - ARRAY_EXPRESS ]   RAB1C [ SEEK ]   RAB1C [ MEM ]
Gene Expression Viewer (FireBrowse)RAB1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441400
GTEX Portal (Tissue expression)RAB1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92928   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92928  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92928
Splice isoforms : SwissVarQ92928
PhosPhoSitePlusQ92928
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB1C
DMDM Disease mutations441400
Blocks (Seattle)RAB1C
SuperfamilyQ92928
Peptide AtlasQ92928
IPIIPI00374519   
Protein Interaction databases
DIP (DOE-UCLA)Q92928
IntAct (EBI)Q92928
BioGRIDRAB1C
STRING (EMBL)RAB1C
ZODIACRAB1C
Ontologies - Pathways
QuickGOQ92928
Ontology : AmiGOGolgi membrane  GTPase activity  GTP binding  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  protein transport  
Ontology : EGO-EBIGolgi membrane  GTPase activity  GTP binding  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  protein transport  
NDEx NetworkRAB1C
Atlas of Cancer Signalling NetworkRAB1C
Wikipedia pathwaysRAB1C
Orthology - Evolution
OrthoDB441400
Phylogenetic Trees/Animal Genes : TreeFamRAB1C
HOVERGENQ92928
HOGENOMQ92928
Homologs : HomoloGeneRAB1C
Homology/Alignments : Family Browser (UCSC)RAB1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB1C
dbVarRAB1C
ClinVarRAB1C
1000_GenomesRAB1C 
Exome Variant ServerRAB1C
ExAC (Exome Aggregation Consortium)RAB1C (select the gene name)
Genetic variants : HAPMAP441400
Genomic Variants (DGV)RAB1C [DGVbeta]
DECIPHERRAB1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB1C 
Mutations
ICGC Data PortalRAB1C 
TCGA Data PortalRAB1C 
Broad Tumor PortalRAB1C
OASIS PortalRAB1C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRAB1C
BioMutasearch RAB1C
DgiDB (Drug Gene Interaction Database)RAB1C
DoCM (Curated mutations)RAB1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB1C (select a term)
intoGenRAB1C
Cancer3DRAB1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB1C
Genetic Testing Registry RAB1C
NextProtQ92928 [Medical]
TSGene441400
GENETestsRAB1C
Target ValidationRAB1C
Huge Navigator RAB1C [HugePedia]
snp3D : Map Gene to Disease441400
BioCentury BCIQRAB1C
ClinGenRAB1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441400
Chemical/Pharm GKB GenePA142671109
Clinical trialRAB1C
Miscellaneous
canSAR (ICR)RAB1C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB1C
EVEXRAB1C
GoPubMedRAB1C
iHOPRAB1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:52:04 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.