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RAB20 (RAB20, member RAS oncogene family)

Identity

Alias_symbol (synonym)FLJ20429
Other alias-
HGNC (Hugo) RAB20
LocusID (NCBI) 55647
Atlas_Id 41965
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 110523066 and ends at 110561737 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VWC2 (7p12.2) / RAB20 (13q34)VWC2 7p12.2 / RAB20 13q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB20   18260
Cards
Entrez_Gene (NCBI)RAB20  55647  RAB20, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB20
Ensembl hg19 (Hinxton)ENSG00000139832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139832 [Gene_View]  chr13:110523066-110561737 [Contig_View]  RAB20 [Vega]
ICGC DataPortalENSG00000139832
TCGA cBioPortalRAB20
AceView (NCBI)RAB20
Genatlas (Paris)RAB20
WikiGenes55647
SOURCE (Princeton)RAB20
Genetics Home Reference (NIH)RAB20
Genomic and cartography
GoldenPath hg38 (UCSC)RAB20  -     chr13:110523066-110561737 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB20  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblRAB20 - 13q34 [CytoView hg19]  RAB20 - 13q34 [CytoView hg38]
Mapping of homologs : NCBIRAB20 [Mapview hg19]  RAB20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ272065 AK000436 AK000446 BC026025 BU528103
RefSeq transcript (Entrez)NM_017817
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB20
Cluster EST : UnigeneHs.743563 [ NCBI ]
CGAP (NCI)Hs.743563
Alternative Splicing GalleryENSG00000139832
Gene ExpressionRAB20 [ NCBI-GEO ]   RAB20 [ EBI - ARRAY_EXPRESS ]   RAB20 [ SEEK ]   RAB20 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55647
GTEX Portal (Tissue expression)RAB20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX57
Splice isoforms : SwissVarQ9NX57
PhosPhoSitePlusQ9NX57
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB20
DMDM Disease mutations55647
Blocks (Seattle)RAB20
SuperfamilyQ9NX57
Human Protein AtlasENSG00000139832
Peptide AtlasQ9NX57
HPRD06694
IPIIPI00015839   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX57
IntAct (EBI)Q9NX57
FunCoupENSG00000139832
BioGRIDRAB20
STRING (EMBL)RAB20
ZODIACRAB20
Ontologies - Pathways
QuickGOQ9NX57
Ontology : AmiGOGTPase activity  GTP binding  early endosome  Golgi apparatus  plasma membrane  protein transport  regulation of endocytosis  phagocytic vesicle membrane  intracellular membrane-bounded organelle  phagocytic vesicle  phagosome acidification  phagosome-lysosome fusion  
Ontology : EGO-EBIGTPase activity  GTP binding  early endosome  Golgi apparatus  plasma membrane  protein transport  regulation of endocytosis  phagocytic vesicle membrane  intracellular membrane-bounded organelle  phagocytic vesicle  phagosome acidification  phagosome-lysosome fusion  
NDEx NetworkRAB20
Atlas of Cancer Signalling NetworkRAB20
Wikipedia pathwaysRAB20
Orthology - Evolution
OrthoDB55647
GeneTree (enSembl)ENSG00000139832
Phylogenetic Trees/Animal Genes : TreeFamRAB20
HOVERGENQ9NX57
HOGENOMQ9NX57
Homologs : HomoloGeneRAB20
Homology/Alignments : Family Browser (UCSC)RAB20
Gene fusions - Rearrangements
Fusion : MitelmanVWC2/RAB20 [7p12.2/13q34]  [t(7;13)(p12;q34)]  
Fusion: TCGAVWC2 7p12.2 RAB20 13q34 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB20
dbVarRAB20
ClinVarRAB20
1000_GenomesRAB20 
Exome Variant ServerRAB20
ExAC (Exome Aggregation Consortium)RAB20 (select the gene name)
Genetic variants : HAPMAP55647
Genomic Variants (DGV)RAB20 [DGVbeta]
DECIPHERRAB20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB20 
Mutations
ICGC Data PortalRAB20 
TCGA Data PortalRAB20 
Broad Tumor PortalRAB20
OASIS PortalRAB20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB20
DgiDB (Drug Gene Interaction Database)RAB20
DoCM (Curated mutations)RAB20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB20 (select a term)
intoGenRAB20
Cancer3DRAB20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB20
Genetic Testing Registry RAB20
NextProtQ9NX57 [Medical]
TSGene55647
GENETestsRAB20
Target ValidationRAB20
Huge Navigator RAB20 [HugePedia]
snp3D : Map Gene to Disease55647
BioCentury BCIQRAB20
ClinGenRAB20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55647
Chemical/Pharm GKB GenePA34110
Clinical trialRAB20
Miscellaneous
canSAR (ICR)RAB20 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB20
EVEXRAB20
GoPubMedRAB20
iHOPRAB20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:00 CEST 2017

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