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RAB20 (RAB20, member RAS oncogene family)

Identity

Alias (NCBI)-
HGNC (Hugo) RAB20
HGNC Alias symbFLJ20429
LocusID (NCBI) 55647
Atlas_Id 41965
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 110523066 and ends at 110561722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
VWC2 (7p12.2)::RAB20 (13q34)VWC2 7p12.2::RAB20 13q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RAB20   18260
Cards
Entrez_Gene (NCBI)RAB20    RAB20, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB20
Ensembl hg19 (Hinxton)ENSG00000139832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139832 [Gene_View]  ENSG00000139832 [Sequence]  chr13:110523066-110561722 [Contig_View]  RAB20 [Vega]
ICGC DataPortalENSG00000139832
TCGA cBioPortalRAB20
AceView (NCBI)RAB20
Genatlas (Paris)RAB20
SOURCE (Princeton)RAB20
Genetics Home Reference (NIH)RAB20
Genomic and cartography
GoldenPath hg38 (UCSC)RAB20  -     chr13:110523066-110561722 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB20  -     13q34   [Description]    (hg19-Feb_2009)
GoldenPathRAB20 - 13q34 [CytoView hg19]  RAB20 - 13q34 [CytoView hg38]
ImmunoBaseENSG00000139832
Genome Data Viewer NCBIRAB20 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ272065 AK000436 AK000446 BC026025 BU528103
RefSeq transcript (Entrez)NM_017817
Consensus coding sequences : CCDS (NCBI)RAB20
Gene ExpressionRAB20 [ NCBI-GEO ]   RAB20 [ EBI - ARRAY_EXPRESS ]   RAB20 [ SEEK ]   RAB20 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB20 [ Firebrowse - Broad ]
GenevisibleExpression of RAB20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55647
GTEX Portal (Tissue expression)RAB20
Human Protein AtlasENSG00000139832-RAB20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX57
PhosPhoSitePlusQ9NX57
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Rab20    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB20
SuperfamilyQ9NX57
AlphaFold pdb e-kbQ9NX57   
Human Protein Atlas [tissue]ENSG00000139832-RAB20 [tissue]
HPRD06694
Protein Interaction databases
DIP (DOE-UCLA)Q9NX57
IntAct (EBI)Q9NX57
BioGRIDRAB20
STRING (EMBL)RAB20
ZODIACRAB20
Ontologies - Pathways
QuickGOQ9NX57
Ontology : AmiGOGTPase activity  GTP binding  Golgi apparatus  intracellular protein transport  endomembrane system  phagocytic vesicle membrane  intracellular membrane-bounded organelle  phagocytic vesicle  cellular response to interferon-gamma  phagosome acidification  phagosome-lysosome fusion  
Ontology : EGO-EBIGTPase activity  GTP binding  Golgi apparatus  intracellular protein transport  endomembrane system  phagocytic vesicle membrane  intracellular membrane-bounded organelle  phagocytic vesicle  cellular response to interferon-gamma  phagosome acidification  phagosome-lysosome fusion  
NDEx NetworkRAB20
Atlas of Cancer Signalling NetworkRAB20
Wikipedia pathwaysRAB20
Orthology - Evolution
OrthoDB55647
GeneTree (enSembl)ENSG00000139832
Phylogenetic Trees/Animal Genes : TreeFamRAB20
Homologs : HomoloGeneRAB20
Homology/Alignments : Family Browser (UCSC)RAB20
Gene fusions - Rearrangements
Fusion : MitelmanVWC2::RAB20 [7p12.2/13q34]  
Fusion : QuiverRAB20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB20
dbVarRAB20
ClinVarRAB20
MonarchRAB20
1000_GenomesRAB20 
Exome Variant ServerRAB20
GNOMAD BrowserENSG00000139832
Varsome BrowserRAB20
ACMGRAB20 variants
VarityQ9NX57
Genomic Variants (DGV)RAB20 [DGVbeta]
DECIPHERRAB20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB20 
Mutations
ICGC Data PortalRAB20 
TCGA Data PortalRAB20 
Broad Tumor PortalRAB20
OASIS PortalRAB20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB20
Mutations and Diseases : HGMDRAB20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRAB20
DgiDB (Drug Gene Interaction Database)RAB20
DoCM (Curated mutations)RAB20
CIViC (Clinical Interpretations of Variants in Cancer)RAB20
Cancer3DRAB20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRAB20
MedgenRAB20
Genetic Testing Registry RAB20
NextProtQ9NX57 [Medical]
GENETestsRAB20
Target ValidationRAB20
Huge Navigator RAB20 [HugePedia]
ClinGenRAB20
Clinical trials, drugs, therapy
MyCancerGenomeRAB20
Protein Interactions : CTDRAB20
Pharm GKB GenePA34110
PharosQ9NX57
Clinical trialRAB20
Miscellaneous
canSAR (ICR)RAB20
HarmonizomeRAB20
ARCHS4RAB20
DataMed IndexRAB20
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRAB20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:54:53 CET 2022

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