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RAB22A (RAB22A, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB22A
LocusID (NCBI) 57403
Atlas_Id 41967
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 56884771 and ends at 56942563 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAB22A (20q13.32) / MYO9B (19p13.11)RAB22A (20q13.32) / PHACTR3 (20q13.32)RAB22A (20q13.32) / RAB22A (20q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB22A   9764
Cards
Entrez_Gene (NCBI)RAB22A  57403  RAB22A, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB22A
Ensembl hg19 (Hinxton)ENSG00000124209 [Gene_View]  chr20:56884771-56942563 [Contig_View]  RAB22A [Vega]
Ensembl hg38 (Hinxton)ENSG00000124209 [Gene_View]  chr20:56884771-56942563 [Contig_View]  RAB22A [Vega]
ICGC DataPortalENSG00000124209
TCGA cBioPortalRAB22A
AceView (NCBI)RAB22A
Genatlas (Paris)RAB22A
WikiGenes57403
SOURCE (Princeton)RAB22A
Genetics Home Reference (NIH)RAB22A
Genomic and cartography
GoldenPath hg19 (UCSC)RAB22A  -     chr20:56884771-56942563 +  20q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB22A  -     20q13.32   [Description]    (hg38-Dec_2013)
EnsemblRAB22A - 20q13.32 [CytoView hg19]  RAB22A - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBIRAB22A [Mapview hg19]  RAB22A [Mapview hg38]
OMIM612966   
Gene and transcription
Genbank (Entrez)AF091034 AJ276210 AK054767 AK091180 BC007036
RefSeq transcript (Entrez)NM_020673
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)RAB22A
Cluster EST : UnigeneHs.529044 [ NCBI ]
CGAP (NCI)Hs.529044
Alternative Splicing GalleryENSG00000124209
Gene ExpressionRAB22A [ NCBI-GEO ]   RAB22A [ EBI - ARRAY_EXPRESS ]   RAB22A [ SEEK ]   RAB22A [ MEM ]
Gene Expression Viewer (FireBrowse)RAB22A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57403
GTEX Portal (Tissue expression)RAB22A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL26
Splice isoforms : SwissVarQ9UL26
PhosPhoSitePlusQ9UL26
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
Conserved Domain (NCBI)RAB22A
DMDM Disease mutations57403
Blocks (Seattle)RAB22A
SuperfamilyQ9UL26
Human Protein AtlasENSG00000124209
Peptide AtlasQ9UL26
HPRD06696
IPIIPI00007756   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL26
IntAct (EBI)Q9UL26
FunCoupENSG00000124209
BioGRIDRAB22A
STRING (EMBL)RAB22A
ZODIACRAB22A
Ontologies - Pathways
QuickGOQ9UL26
Ontology : AmiGOruffle  GTPase activity  GTPase activity  protein binding  GTP binding  early endosome  late endosome  plasma membrane  intracellular protein transport  endocytosis  nucleocytoplasmic transport  endosome organization  small GTPase mediated signal transduction  metabolic process  endosome membrane  actin cytoskeleton  GDP binding  phagocytic vesicle membrane  phagocytic vesicle  extracellular exosome  regulation of vesicle size  
Ontology : EGO-EBIruffle  GTPase activity  GTPase activity  protein binding  GTP binding  early endosome  late endosome  plasma membrane  intracellular protein transport  endocytosis  nucleocytoplasmic transport  endosome organization  small GTPase mediated signal transduction  metabolic process  endosome membrane  actin cytoskeleton  GDP binding  phagocytic vesicle membrane  phagocytic vesicle  extracellular exosome  regulation of vesicle size  
Pathways : KEGGEndocytosis   
NDEx NetworkRAB22A
Atlas of Cancer Signalling NetworkRAB22A
Wikipedia pathwaysRAB22A
Orthology - Evolution
OrthoDB57403
GeneTree (enSembl)ENSG00000124209
Phylogenetic Trees/Animal Genes : TreeFamRAB22A
HOVERGENQ9UL26
HOGENOMQ9UL26
Homologs : HomoloGeneRAB22A
Homology/Alignments : Family Browser (UCSC)RAB22A
Gene fusions - Rearrangements
Fusion : MitelmanRAB22A/MYO9B [20q13.32/19p13.11]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB22A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB22A
dbVarRAB22A
ClinVarRAB22A
1000_GenomesRAB22A 
Exome Variant ServerRAB22A
ExAC (Exome Aggregation Consortium)RAB22A (select the gene name)
Genetic variants : HAPMAP57403
Genomic Variants (DGV)RAB22A [DGVbeta]
DECIPHER (Syndromes)20:56884771-56942563  ENSG00000124209
CONAN: Copy Number AnalysisRAB22A 
Mutations
ICGC Data PortalRAB22A 
TCGA Data PortalRAB22A 
Broad Tumor PortalRAB22A
OASIS PortalRAB22A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB22A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB22A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB22A
DgiDB (Drug Gene Interaction Database)RAB22A
DoCM (Curated mutations)RAB22A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB22A (select a term)
intoGenRAB22A
Cancer3DRAB22A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612966   
Orphanet
MedgenRAB22A
Genetic Testing Registry RAB22A
NextProtQ9UL26 [Medical]
TSGene57403
GENETestsRAB22A
Huge Navigator RAB22A [HugePedia]
snp3D : Map Gene to Disease57403
BioCentury BCIQRAB22A
ClinGenRAB22A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57403
Chemical/Pharm GKB GenePA34112
Clinical trialRAB22A
Miscellaneous
canSAR (ICR)RAB22A (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB22A
EVEXRAB22A
GoPubMedRAB22A
iHOPRAB22A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:54 CET 2017

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