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RAB23 (RAB23, member RAS oncogene family)

Identity

Other namesHSPC137
HGNC (Hugo) RAB23
LocusID (NCBI) 51715
Atlas_Id 41968
Location 6p11.2  [Link to chromosome band 6p11]
Location_base_pair Starts at 57051791 and ends at 57087112 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAB23 (6p11.2) / RAB23 (6p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB23   14263
Cards
Entrez_Gene (NCBI)RAB23  51715  RAB23, member RAS oncogene family
AliasesHSPC137
GeneCards (Weizmann)RAB23
Ensembl hg19 (Hinxton)ENSG00000112210 [Gene_View]  chr6:57051791-57087112 [Contig_View]  RAB23 [Vega]
Ensembl hg38 (Hinxton)ENSG00000112210 [Gene_View]  chr6:57051791-57087112 [Contig_View]  RAB23 [Vega]
ICGC DataPortalENSG00000112210
TCGA cBioPortalRAB23
AceView (NCBI)RAB23
Genatlas (Paris)RAB23
WikiGenes51715
SOURCE (Princeton)RAB23
Genomic and cartography
GoldenPath hg19 (UCSC)RAB23  -     chr6:57051791-57087112 -  6p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB23  -     6p11.2   [Description]    (hg38-Dec_2013)
EnsemblRAB23 - 6p11.2 [CytoView hg19]  RAB23 - 6p11.2 [CytoView hg38]
Mapping of homologs : NCBIRAB23 [Mapview hg19]  RAB23 [Mapview hg38]
OMIM201000   606144   
Gene and transcription
Genbank (Entrez)AB025427 AB034244 AF161486 AF498951 AK311123
RefSeq transcript (Entrez)NM_001278666 NM_001278667 NM_001278668 NM_016277 NM_183227
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_012170 NT_007592 NW_004929326
Consensus coding sequences : CCDS (NCBI)RAB23
Cluster EST : UnigeneHs.555016 [ NCBI ]
CGAP (NCI)Hs.555016
Alternative Splicing GalleryENSG00000112210
Gene ExpressionRAB23 [ NCBI-GEO ]   RAB23 [ EBI - ARRAY_EXPRESS ]   RAB23 [ SEEK ]   RAB23 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51715
GTEX Portal (Tissue expression)RAB23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULC3 (Uniprot)
NextProtQ9ULC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULC3
Splice isoforms : SwissVarQ9ULC3 (Swissvar)
PhosPhoSitePlusQ9ULC3
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations51715
Blocks (Seattle)RAB23
SuperfamilyQ9ULC3
Human Protein AtlasENSG00000112210
Peptide AtlasQ9ULC3
HPRD05850
IPIIPI00008034   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULC3
IntAct (EBI)Q9ULC3
FunCoupENSG00000112210
BioGRIDRAB23
STRING (EMBL)RAB23
ZODIACRAB23
Ontologies - Pathways
QuickGOQ9ULC3
Ontology : AmiGOautophagosome assembly  GTPase activity  protein binding  GTP binding  cytoplasm  autophagosome  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  cellular defense response  small GTPase mediated signal transduction  metabolic process  endosome membrane  phagocytic vesicle membrane  cilium assembly  negative regulation of transcription factor import into nucleus  phagocytic vesicle  extracellular exosome  craniofacial suture morphogenesis  
Ontology : EGO-EBIautophagosome assembly  GTPase activity  protein binding  GTP binding  cytoplasm  autophagosome  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  cellular defense response  small GTPase mediated signal transduction  metabolic process  endosome membrane  phagocytic vesicle membrane  cilium assembly  negative regulation of transcription factor import into nucleus  phagocytic vesicle  extracellular exosome  craniofacial suture morphogenesis  
Pathways : KEGGHedgehog signaling pathway   
NDEx NetworkRAB23
Atlas of Cancer Signalling NetworkRAB23
Wikipedia pathwaysRAB23
Orthology - Evolution
OrthoDB51715
GeneTree (enSembl)ENSG00000112210
Phylogenetic Trees/Animal Genes : TreeFamRAB23
Homologs : HomoloGeneRAB23
Homology/Alignments : Family Browser (UCSC)RAB23
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRAB23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB23
dbVarRAB23
ClinVarRAB23
1000_GenomesRAB23 
Exome Variant ServerRAB23
ExAC (Exome Aggregation Consortium)RAB23 (select the gene name)
Genetic variants : HAPMAP51715
Genomic Variants (DGV)RAB23 [DGVbeta]
Mutations
ICGC Data PortalRAB23 
TCGA Data PortalRAB23 
Broad Tumor PortalRAB23
OASIS PortalRAB23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB23 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch RAB23
DgiDB (Drug Gene Interaction Database)RAB23
DoCM (Curated mutations)RAB23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB23 (select a term)
intoGenRAB23
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:57051791-57087112  ENSG00000112210
CONAN: Copy Number AnalysisRAB23 
Mutations and Diseases : HGMDRAB23
OMIM201000    606144   
MedgenRAB23
Genetic Testing Registry RAB23
NextProtQ9ULC3 [Medical]
TSGene51715
GENETestsRAB23
Huge Navigator RAB23 [HugePedia]
snp3D : Map Gene to Disease51715
BioCentury BCIQRAB23
ClinGenRAB23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51715
Chemical/Pharm GKB GenePA34113
Clinical trialRAB23
Miscellaneous
canSAR (ICR)RAB23 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB23
EVEXRAB23
GoPubMedRAB23
iHOPRAB23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 19:09:34 CEST 2016

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