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RAB23 (RAB23, member RAS oncogene family)

Identity

Other namesHSPC137
HGNC (Hugo) RAB23
LocusID (NCBI) 51715
Location 6p11.2
Location_base_pair Starts at 57051791 and ends at 57087112 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB23   14263
Cards
Entrez_Gene (NCBI)RAB23  51715  RAB23, member RAS oncogene family
GeneCards (Weizmann)RAB23
Ensembl (Hinxton) [Gene_View]  chr6:57051791-57087112 [Contig_View]  RAB23 [Vega]
cBioPortalRAB23
AceView (NCBI)RAB23
Genatlas (Paris)RAB23
WikiGenes51715
SOURCE (Princeton)NM_001278666 NM_001278667 NM_001278668 NM_016277 NM_183227
Genomic and cartography
GoldenPath (UCSC)RAB23  -  6p11.2   chr6:57051791-57087112 -  6p11.2   [Description]    (hg19-Feb_2009)
EnsemblRAB23 - 6p11.2 [CytoView]
Mapping of homologs : NCBIRAB23 [Mapview]
OMIM201000   606144   
Gene and transcription
Genbank (Entrez)AB025427 AB034244 AF161486 AF498951 AK311123
RefSeq transcript (Entrez)NM_001278666 NM_001278667 NM_001278668 NM_016277 NM_183227
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NG_012170 NT_007592 NW_001838981 NW_004929326
Consensus coding sequences : CCDS (NCBI)RAB23
Cluster EST : UnigeneHs.555016 [ NCBI ]
CGAP (NCI)Hs.555016
Alternative Splicing : Fast-db (Paris)GSHG0026704
Gene ExpressionRAB23 [ NCBI-GEO ]     RAB23 [ SEEK ]   RAB23 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULC3 (Uniprot)
NextProtQ9ULC3  [Medical]
With graphics : InterProQ9ULC3
Splice isoforms : SwissVarQ9ULC3 (Swissvar)
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase [organisation]   Small_GTP-bd_dom [organisation]   Small_GTPase [organisation]   Small_GTPase_Rab_type [organisation]  
Related proteins : CluSTrQ9ULC3
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations51715
Blocks (Seattle)Q9ULC3
Peptide AtlasQ9ULC3
HPRD05850
IPIIPI00008034   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULC3
IntAct (EBI)Q9ULC3
BioGRIDRAB23
InParanoidQ9ULC3
Interologous Interaction database Q9ULC3
IntegromeDBRAB23
STRING (EMBL)RAB23
Ontologies - Pathways
Ontology : AmiGOautophagic vacuole assembly  GTPase activity  GTP binding  cytoplasm  autophagic vacuole  plasma membrane  GTP catabolic process  cellular defense response  small GTPase mediated signal transduction  regulation of smoothened signaling pathway  endosome membrane  protein transport  spinal cord dorsal/ventral patterning  phagocytic vesicle membrane  embryonic digit morphogenesis  negative regulation of transcription factor import into nucleus  phagocytic vesicle  negative regulation of proteolysis  extracellular vesicular exosome  craniofacial suture morphogenesis  
Ontology : EGO-EBIautophagic vacuole assembly  GTPase activity  GTP binding  cytoplasm  autophagic vacuole  plasma membrane  GTP catabolic process  cellular defense response  small GTPase mediated signal transduction  regulation of smoothened signaling pathway  endosome membrane  protein transport  spinal cord dorsal/ventral patterning  phagocytic vesicle membrane  embryonic digit morphogenesis  negative regulation of transcription factor import into nucleus  phagocytic vesicle  negative regulation of proteolysis  extracellular vesicular exosome  craniofacial suture morphogenesis  
Pathways : KEGGHedgehog signaling pathway   
Protein Interaction DatabaseRAB23
Wikipedia pathwaysRAB23
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RAB23
snp3D : Map Gene to Disease51715
SNP (GeneSNP Utah)RAB23
SNP : HGBaseRAB23
Genetic variants : HAPMAPRAB23
Exome VariantRAB23
1000_GenomesRAB23 
Somatic Mutations in Cancer : COSMICRAB23 
CONAN: Copy Number AnalysisRAB23 
Mutations and Diseases : HGMDRAB23
Genomic VariantsRAB23  RAB23 [DGVbeta]
dbVarRAB23
ClinVarRAB23
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM201000    606144   
MedgenRAB23
GENETestsRAB23
Disease Genetic AssociationRAB23
Huge Navigator RAB23 [HugePedia]  RAB23 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRAB23
Homology/Alignments : Family Browser (UCSC)RAB23
Phylogenetic Trees/Animal Genes : TreeFamRAB23
Chemical/Protein Interactions : CTD51715
Chemical/Pharm GKB GenePA34113
Clinical trialRAB23
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
CoreMineRAB23
iHOPRAB23
OncoSearchRAB23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:12:03 CEST 2014

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