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RAB23 (RAB23, member RAS oncogene family)

Identity

Other namesHSPC137
HGNC (Hugo) RAB23
LocusID (NCBI) 51715
Location 6p11.2
Location_base_pair Starts at 57053582 and ends at 57087078 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB23   14263
Entrez_Gene (NCBI)RAB23  51715  RAB23, member RAS oncogene family
Cards
GeneCards (Weizmann)RAB23
Ensembl (Hinxton)ENSG00000112210 [Gene_View]  chr6:57053582-57087078 [Contig_View]  RAB23 [Vega]
AceView (NCBI)RAB23
Genatlas (Paris)RAB23
SOURCE (Stanford)NM_016277 NM_183227
Genomic and cartography
GoldenPath (UCSC)RAB23  -  6p11.2   chr6:57053582-57087078 -  6p11.2   [Description]    (hg19-Feb_2009)
EnsemblRAB23 - 6p11.2 [CytoView]
Mapping of homologs : NCBIRAB23 [Mapview]
OMIM201000   606144   
Gene and transcription
Genbank (Entrez)AB025427 AB034244 AF161486 AF498951 AK311123
RefSeq transcript (SRS)NM_016277 NM_183227
RefSeq transcript (Entrez)NM_016277 NM_183227
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NG_012170 NT_007592 NW_001838981 NW_004078026
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NG_012170 NT_007592 NW_001838981 NW_004078026
Consensus coding sequences : CCDS (NCBI)RAB23
Cluster EST : UnigeneHs.555016 [ SRS ] Hs.555016 [ NCBI ]
CGAP (NCI)Hs.555016
Alternative Splicing : Fast-db (Paris)GSHG0026704
Alternative Splicing GalleryENSG00000112210
Gene ExpressionRAB23 [ NCBI-GEO ]   RAB23 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULC3 (SRS) Q9ULC3 (Uniprot)
NextProtQ9ULC3
With graphics : InterProQ9ULC3
Splice isoforms : SwissVarQ9ULC3(Swissvar)
Domaine pattern : Prosite (SRS)RAB (PS51419)   
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (SRS)Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domains : Interpro (EBI)Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Related proteins : CluSTrQ9ULC3
Domain families : Pfam (SRS)Ras (PF00071)   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM51715
Blocks (Seattle)Q9ULC3
Human Protein AtlasENSG00000112210
HPRD05850
IPIIPI00008034   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULC3
IntAct (EBI)Q9ULC3
FunCoupENSG00000112210
REACTOMERAB23
Protein Interaction Database51715
BioGRIDRAB23
InParanoidQ9ULC3
Interologous Interaction database Q9ULC3
IntegromeDBRAB23
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RAB23
SNP (GeneSNP Utah)RAB23
SNP : HGBaseRAB23
Genetic variants : HAPMAPRAB23
Somatic Mutations in Cancer : COSMICRAB23 
CONAN: Copy Number AnalysisRAB23 
Mutations and Diseases : HGMDRAB23
OMIM201000    606144   
GENETests201000    606144   
Disease Genetic AssociationRAB23
Huge Navigator RAB23 [HugePedia]  RAB23 [HugeCancerGEM]
Genomic VariantsRAB23  RAB23 [DGVbeta]
snp3D : Map Gene to Disease51715
General knowledge
Homologs : HomoloGeneRAB23
Homology/Alignments : Family Browser (UCSC)RAB23
Phylogenetic Trees/Animal Genes : TreeFamRAB23
Chemical/Protein Interactions : CTD51715
Chemical/Pharm GKB GenePA34113
Clinical trialRAB23
Cancer Resource (Charite)ENSG00000112210
Ontology : AmiGOautophagic vacuole assembly  GTPase activity  GTP binding  cytoplasm  autophagic vacuole  plasma membrane  GTP catabolic process  cellular defense response  small GTPase mediated signal transduction  regulation of smoothened signaling pathway  protein transport  spinal cord dorsal/ventral patterning  embryonic digit morphogenesis  negative regulation of transcription factor import into nucleus  phagocytic vesicle  negative regulation of proteolysis  craniofacial suture morphogenesis  
Ontology : EGO-EBIautophagic vacuole assembly  GTPase activity  GTP binding  cytoplasm  autophagic vacuole  plasma membrane  GTP catabolic process  cellular defense response  small GTPase mediated signal transduction  regulation of smoothened signaling pathway  protein transport  spinal cord dorsal/ventral patterning  embryonic digit morphogenesis  negative regulation of transcription factor import into nucleus  phagocytic vesicle  negative regulation of proteolysis  craniofacial suture morphogenesis  
Pathways : KEGGHedgehog signaling pathway
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGeneRAB23
iHOPRAB23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:30:33 CEST 2013
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