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RAB24 (RAB24, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB24
LocusID (NCBI) 53917
Atlas_Id 41969
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 177301190 and ends at 177303744 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDE4D (5q11.2) / RAB24 (5q35.3)PDE4D 5q11.2 / RAB24 5q35.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB24   9765
Cards
Entrez_Gene (NCBI)RAB24  53917  RAB24, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB24
Ensembl hg19 (Hinxton)ENSG00000169228 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169228 [Gene_View]  chr5:177301190-177303744 [Contig_View]  RAB24 [Vega]
ICGC DataPortalENSG00000169228
TCGA cBioPortalRAB24
AceView (NCBI)RAB24
Genatlas (Paris)RAB24
WikiGenes53917
SOURCE (Princeton)RAB24
Genetics Home Reference (NIH)RAB24
Genomic and cartography
GoldenPath hg38 (UCSC)RAB24  -     chr5:177301190-177303744 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB24  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblRAB24 - 5q35.3 [CytoView hg19]  RAB24 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIRAB24 [Mapview hg19]  RAB24 [Mapview hg38]
OMIM612415   
Gene and transcription
Genbank (Entrez)AF087904 AF258583 AI868941 AK021761 AK308155
RefSeq transcript (Entrez)NM_001031677 NM_130781
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB24
Cluster EST : UnigeneHs.16258 [ NCBI ]
CGAP (NCI)Hs.16258
Alternative Splicing GalleryENSG00000169228
Gene ExpressionRAB24 [ NCBI-GEO ]   RAB24 [ EBI - ARRAY_EXPRESS ]   RAB24 [ SEEK ]   RAB24 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53917
GTEX Portal (Tissue expression)RAB24
Human Protein AtlasENSG00000169228-RAB24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969Q5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969Q5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969Q5
Splice isoforms : SwissVarQ969Q5
PhosPhoSitePlusQ969Q5
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB24
DMDM Disease mutations53917
Blocks (Seattle)RAB24
SuperfamilyQ969Q5
Human Protein Atlas [tissue]ENSG00000169228-RAB24 [tissue]
Peptide AtlasQ969Q5
HPRD06697
IPIIPI00056496   IPI00383176   IPI00396617   IPI00792833   
Protein Interaction databases
DIP (DOE-UCLA)Q969Q5
IntAct (EBI)Q969Q5
FunCoupENSG00000169228
BioGRIDRAB24
STRING (EMBL)RAB24
ZODIACRAB24
Ontologies - Pathways
QuickGOQ969Q5
Ontology : AmiGOGTPase activity  protein binding  GTP binding  mitochondrion  autophagosome  cytosol  plasma membrane  autophagy  protein transport  secretory granule membrane  neutrophil degranulation  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  mitochondrion  autophagosome  cytosol  plasma membrane  autophagy  protein transport  secretory granule membrane  neutrophil degranulation  
NDEx NetworkRAB24
Atlas of Cancer Signalling NetworkRAB24
Wikipedia pathwaysRAB24
Orthology - Evolution
OrthoDB53917
GeneTree (enSembl)ENSG00000169228
Phylogenetic Trees/Animal Genes : TreeFamRAB24
HOVERGENQ969Q5
HOGENOMQ969Q5
Homologs : HomoloGeneRAB24
Homology/Alignments : Family Browser (UCSC)RAB24
Gene fusions - Rearrangements
Fusion : MitelmanPDE4D/RAB24 [5q11.2/5q35.3]  [t(5;5)(q12;q35)]  
Fusion: TCGA_MDACCPDE4D 5q11.2 RAB24 5q35.3 PRAD
Tumor Fusion PortalRAB24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB24
dbVarRAB24
ClinVarRAB24
1000_GenomesRAB24 
Exome Variant ServerRAB24
ExAC (Exome Aggregation Consortium)ENSG00000169228
GNOMAD BrowserENSG00000169228
Genetic variants : HAPMAP53917
Genomic Variants (DGV)RAB24 [DGVbeta]
DECIPHERRAB24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB24 
Mutations
ICGC Data PortalRAB24 
TCGA Data PortalRAB24 
Broad Tumor PortalRAB24
OASIS PortalRAB24 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRAB24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RAB24
DgiDB (Drug Gene Interaction Database)RAB24
DoCM (Curated mutations)RAB24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB24 (select a term)
intoGenRAB24
Cancer3DRAB24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612415   
Orphanet
DisGeNETRAB24
MedgenRAB24
Genetic Testing Registry RAB24
NextProtQ969Q5 [Medical]
TSGene53917
GENETestsRAB24
Target ValidationRAB24
Huge Navigator RAB24 [HugePedia]
snp3D : Map Gene to Disease53917
BioCentury BCIQRAB24
ClinGenRAB24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53917
Chemical/Pharm GKB GenePA34114
Clinical trialRAB24
Miscellaneous
canSAR (ICR)RAB24 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB24
EVEXRAB24
GoPubMedRAB24
iHOPRAB24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:31:16 CET 2017

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