Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RAB29 (RAB29, member RAS oncogene family)

Identity

Alias_namesRAB7L
RAB7L1
RAB7
Other alias
HGNC (Hugo) RAB29
LocusID (NCBI) 8934
Atlas_Id 53890
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 205767986 and ends at 205775482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GAS5 (1q25.1) / RAB29 (1q32.1)MICB (6p21.33) / RAB29 (1q32.1)TBC1D20 (20p13) / RAB29 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB29   9789
Cards
Entrez_Gene (NCBI)RAB29  8934  RAB29, member RAS oncogene family
AliasesRAB7L; RAB7L1
GeneCards (Weizmann)RAB29
Ensembl hg19 (Hinxton)ENSG00000117280 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117280 [Gene_View]  chr1:205767986-205775482 [Contig_View]  RAB29 [Vega]
ICGC DataPortalENSG00000117280
TCGA cBioPortalRAB29
AceView (NCBI)RAB29
Genatlas (Paris)RAB29
WikiGenes8934
SOURCE (Princeton)RAB29
Genetics Home Reference (NIH)RAB29
Genomic and cartography
GoldenPath hg38 (UCSC)RAB29  -     chr1:205767986-205775482 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB29  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblRAB29 - 1q32.1 [CytoView hg19]  RAB29 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIRAB29 [Mapview hg19]  RAB29 [Mapview hg38]
OMIM603949   
Gene and transcription
Genbank (Entrez)AK223514 AK303879 AK308359 AK311085 AK313000
RefSeq transcript (Entrez)NM_001135662 NM_001135663 NM_001135664 NM_003929
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB29
Cluster EST : UnigeneHs.115325 [ NCBI ]
CGAP (NCI)Hs.115325
Alternative Splicing GalleryENSG00000117280
Gene ExpressionRAB29 [ NCBI-GEO ]   RAB29 [ EBI - ARRAY_EXPRESS ]   RAB29 [ SEEK ]   RAB29 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8934
GTEX Portal (Tissue expression)RAB29
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14966   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14966  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14966
Splice isoforms : SwissVarO14966
PhosPhoSitePlusO14966
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Rab29/Rab38/Rab32    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB29
DMDM Disease mutations8934
Blocks (Seattle)RAB29
SuperfamilyO14966
Human Protein AtlasENSG00000117280
Peptide AtlasO14966
HPRD11962
IPIIPI00024775   IPI00976350   IPI00913930   IPI00909756   
Protein Interaction databases
DIP (DOE-UCLA)O14966
IntAct (EBI)O14966
FunCoupENSG00000117280
BioGRIDRAB29
STRING (EMBL)RAB29
ZODIACRAB29
Ontologies - Pathways
QuickGOO14966
Ontology : AmiGOpositive regulation of receptor recycling  GTPase activity  protein binding  GTP binding  cytoplasm  mitochondrion  early endosome  vacuole  Golgi apparatus  cis-Golgi network  trans-Golgi network  cytosol  cytoskeleton  plasma membrane  ER to Golgi vesicle-mediated transport  mitochondrion organization  Golgi organization  synapse assembly  response to bacterium  negative regulation of neuron projection development  protein transport  Rab GTPase binding  GDP binding  kinesin binding  symbiont-containing vacuole  melanosome organization  viral RNA genome replication  T cell activation  retrograde transport, endosome to Golgi  melanosome  perinuclear region of cytoplasm  positive regulation of T cell receptor signaling pathway  recycling endosome  extracellular exosome  dynein complex binding  protein localization to membrane  positive regulation of intracellular protein transport  intracellular vesicle  regulation of neuron death  protein localization to ciliary membrane  regulation of retrograde transport, endosome to Golgi  multi-organism toxin transport  
Ontology : EGO-EBIpositive regulation of receptor recycling  GTPase activity  protein binding  GTP binding  cytoplasm  mitochondrion  early endosome  vacuole  Golgi apparatus  cis-Golgi network  trans-Golgi network  cytosol  cytoskeleton  plasma membrane  ER to Golgi vesicle-mediated transport  mitochondrion organization  Golgi organization  synapse assembly  response to bacterium  negative regulation of neuron projection development  protein transport  Rab GTPase binding  GDP binding  kinesin binding  symbiont-containing vacuole  melanosome organization  viral RNA genome replication  T cell activation  retrograde transport, endosome to Golgi  melanosome  perinuclear region of cytoplasm  positive regulation of T cell receptor signaling pathway  recycling endosome  extracellular exosome  dynein complex binding  protein localization to membrane  positive regulation of intracellular protein transport  intracellular vesicle  regulation of neuron death  protein localization to ciliary membrane  regulation of retrograde transport, endosome to Golgi  multi-organism toxin transport  
NDEx NetworkRAB29
Atlas of Cancer Signalling NetworkRAB29
Wikipedia pathwaysRAB29
Orthology - Evolution
OrthoDB8934
GeneTree (enSembl)ENSG00000117280
Phylogenetic Trees/Animal Genes : TreeFamRAB29
HOVERGENO14966
HOGENOMO14966
Homologs : HomoloGeneRAB29
Homology/Alignments : Family Browser (UCSC)RAB29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB29
dbVarRAB29
ClinVarRAB29
1000_GenomesRAB29 
Exome Variant ServerRAB29
ExAC (Exome Aggregation Consortium)RAB29 (select the gene name)
Genetic variants : HAPMAP8934
Genomic Variants (DGV)RAB29 [DGVbeta]
DECIPHERRAB29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB29 
Mutations
ICGC Data PortalRAB29 
TCGA Data PortalRAB29 
Broad Tumor PortalRAB29
OASIS PortalRAB29 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRAB29
BioMutasearch RAB29
DgiDB (Drug Gene Interaction Database)RAB29
DoCM (Curated mutations)RAB29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB29 (select a term)
intoGenRAB29
Cancer3DRAB29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603949   
Orphanet
MedgenRAB29
Genetic Testing Registry RAB29
NextProtO14966 [Medical]
TSGene8934
GENETestsRAB29
Huge Navigator RAB29 [HugePedia]
snp3D : Map Gene to Disease8934
BioCentury BCIQRAB29
ClinGenRAB29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8934
Chemical/Pharm GKB GenePA34151
Clinical trialRAB29
Miscellaneous
canSAR (ICR)RAB29 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB29
EVEXRAB29
GoPubMedRAB29
iHOPRAB29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:33:49 CEST 2017

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