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RAB30 (RAB30, member RAS oncogene family)

Identity

Alias (NCBI)-
HGNC (Hugo) RAB30
LocusID (NCBI) 27314
Atlas_Id 41977
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 82973133 and ends at 83071897 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRCP (11q14.1) / RAB30 (11q14.1)RAB30 (11q14.1) / PRCP (11q14.1)PRCP 11q14.1 / RAB30 11q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RAB30   9770
Cards
Entrez_Gene (NCBI)RAB30    RAB30, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB30
Ensembl hg19 (Hinxton)ENSG00000137502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137502 [Gene_View]  ENSG00000137502 [Sequence]  chr11:82973133-83071897 [Contig_View]  RAB30 [Vega]
ICGC DataPortalENSG00000137502
TCGA cBioPortalRAB30
AceView (NCBI)RAB30
Genatlas (Paris)RAB30
SOURCE (Princeton)RAB30
Genetics Home Reference (NIH)RAB30
Genomic and cartography
GoldenPath hg38 (UCSC)RAB30  -     chr11:82973133-83071897 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB30  -     11q14.1   [Description]    (hg19-Feb_2009)
GoldenPathRAB30 - 11q14.1 [CytoView hg19]  RAB30 - 11q14.1 [CytoView hg38]
ImmunoBaseENSG00000137502
Genome Data Viewer NCBIRAB30 [Mapview hg19]  
OMIM605693   
Gene and transcription
Genbank (Entrez)AF498956 AK092185 AK291376 AK310082 AK312323
RefSeq transcript (Entrez)NM_001286059 NM_001286060 NM_001286061 NM_014488
Consensus coding sequences : CCDS (NCBI)RAB30
Gene ExpressionRAB30 [ NCBI-GEO ]   RAB30 [ EBI - ARRAY_EXPRESS ]   RAB30 [ SEEK ]   RAB30 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB30 [ Firebrowse - Broad ]
GenevisibleExpression of RAB30 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27314
GTEX Portal (Tissue expression)RAB30
Human Protein AtlasENSG00000137502-RAB30 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15771   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15771  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15771
PhosPhoSitePlusQ15771
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Rab30    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB30
PDB (RSDB)2EW1   
PDB Europe2EW1   
PDB (PDBSum)2EW1   
PDB (IMB)2EW1   
Structural Biology KnowledgeBase2EW1   
SCOP (Structural Classification of Proteins)2EW1   
CATH (Classification of proteins structures)2EW1   
SuperfamilyQ15771
AlphaFold pdb e-kbQ15771   
Human Protein Atlas [tissue]ENSG00000137502-RAB30 [tissue]
HPRD05750
Protein Interaction databases
DIP (DOE-UCLA)Q15771
IntAct (EBI)Q15771
BioGRIDRAB30
STRING (EMBL)RAB30
ZODIACRAB30
Ontologies - Pathways
QuickGOQ15771
Ontology : AmiGOGolgi membrane  GTPase activity  protein binding  GTP binding  Golgi stack  cis-Golgi network  trans-Golgi network  trans-Golgi network  Golgi organization  Golgi cisterna  Rab protein signal transduction  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGolgi membrane  GTPase activity  protein binding  GTP binding  Golgi stack  cis-Golgi network  trans-Golgi network  trans-Golgi network  Golgi organization  Golgi cisterna  Rab protein signal transduction  intracellular membrane-bounded organelle  
NDEx NetworkRAB30
Atlas of Cancer Signalling NetworkRAB30
Wikipedia pathwaysRAB30
Orthology - Evolution
OrthoDB27314
GeneTree (enSembl)ENSG00000137502
Phylogenetic Trees/Animal Genes : TreeFamRAB30
Homologs : HomoloGeneRAB30
Homology/Alignments : Family Browser (UCSC)RAB30
Gene fusions - Rearrangements
Fusion : MitelmanPRCP/RAB30 [11q14.1/11q14.1]  
Fusion Cancer (Beijing)RAB30 [11q14.1]  -  PRCP [11q14.1]  [FUSC000500]
Fusion : QuiverRAB30
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB30
dbVarRAB30
ClinVarRAB30
MonarchRAB30
1000_GenomesRAB30 
Exome Variant ServerRAB30
GNOMAD BrowserENSG00000137502
Varsome BrowserRAB30
ACMGRAB30 variants
VarityQ15771
Genomic Variants (DGV)RAB30 [DGVbeta]
DECIPHERRAB30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB30 
Mutations
ICGC Data PortalRAB30 
TCGA Data PortalRAB30 
Broad Tumor PortalRAB30
OASIS PortalRAB30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB30  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB30
Mutations and Diseases : HGMDRAB30
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRAB30
DgiDB (Drug Gene Interaction Database)RAB30
DoCM (Curated mutations)RAB30
CIViC (Clinical Interpretations of Variants in Cancer)RAB30
Cancer3DRAB30
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605693   
Orphanet
DisGeNETRAB30
MedgenRAB30
Genetic Testing Registry RAB30
NextProtQ15771 [Medical]
GENETestsRAB30
Target ValidationRAB30
Huge Navigator RAB30 [HugePedia]
ClinGenRAB30
Clinical trials, drugs, therapy
MyCancerGenomeRAB30
Protein Interactions : CTDRAB30
Pharm GKB GenePA34121
PharosQ15771
Clinical trialRAB30
Miscellaneous
canSAR (ICR)RAB30
HarmonizomeRAB30
DataMed IndexRAB30
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRAB30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:50 CEST 2021

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