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RAB30 (RAB30, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB30
LocusID (NCBI) 27314
Atlas_Id 41977
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 82973133 and ends at 83034569 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRCP (11q14.1) / RAB30 (11q14.1)RAB30 (11q14.1) / PRCP (11q14.1)PRCP 11q14.1 / RAB30 11q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB30   9770
Cards
Entrez_Gene (NCBI)RAB30  27314  RAB30, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB30
Ensembl hg19 (Hinxton)ENSG00000137502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137502 [Gene_View]  chr11:82973133-83034569 [Contig_View]  RAB30 [Vega]
ICGC DataPortalENSG00000137502
TCGA cBioPortalRAB30
AceView (NCBI)RAB30
Genatlas (Paris)RAB30
WikiGenes27314
SOURCE (Princeton)RAB30
Genetics Home Reference (NIH)RAB30
Genomic and cartography
GoldenPath hg38 (UCSC)RAB30  -     chr11:82973133-83034569 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB30  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblRAB30 - 11q14.1 [CytoView hg19]  RAB30 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBIRAB30 [Mapview hg19]  RAB30 [Mapview hg38]
OMIM605693   
Gene and transcription
Genbank (Entrez)AF498956 AK092185 AK291376 AK310082 AK312323
RefSeq transcript (Entrez)NM_001286059 NM_001286060 NM_001286061 NM_014488
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB30
Cluster EST : UnigeneHs.594773 [ NCBI ]
CGAP (NCI)Hs.594773
Alternative Splicing GalleryENSG00000137502
Gene ExpressionRAB30 [ NCBI-GEO ]   RAB30 [ EBI - ARRAY_EXPRESS ]   RAB30 [ SEEK ]   RAB30 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27314
GTEX Portal (Tissue expression)RAB30
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15771   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15771  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15771
Splice isoforms : SwissVarQ15771
PhosPhoSitePlusQ15771
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB30
DMDM Disease mutations27314
Blocks (Seattle)RAB30
PDB (SRS)2EW1   
PDB (PDBSum)2EW1   
PDB (IMB)2EW1   
PDB (RSDB)2EW1   
Structural Biology KnowledgeBase2EW1   
SCOP (Structural Classification of Proteins)2EW1   
CATH (Classification of proteins structures)2EW1   
SuperfamilyQ15771
Human Protein AtlasENSG00000137502
Peptide AtlasQ15771
HPRD05750
IPIIPI00302030   IPI00425916   IPI00976764   IPI00978752   IPI00977555   IPI00976105   IPI00982387   IPI00981740   IPI00983314   IPI00981677   IPI00982323   IPI00975683   IPI00979972   
Protein Interaction databases
DIP (DOE-UCLA)Q15771
IntAct (EBI)Q15771
FunCoupENSG00000137502
BioGRIDRAB30
STRING (EMBL)RAB30
ZODIACRAB30
Ontologies - Pathways
QuickGOQ15771
Ontology : AmiGOGolgi membrane  GTPase activity  GTP binding  Golgi stack  cis-Golgi network  trans-Golgi network  Golgi organization  Golgi cisterna  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGolgi membrane  GTPase activity  GTP binding  Golgi stack  cis-Golgi network  trans-Golgi network  Golgi organization  Golgi cisterna  intracellular membrane-bounded organelle  
NDEx NetworkRAB30
Atlas of Cancer Signalling NetworkRAB30
Wikipedia pathwaysRAB30
Orthology - Evolution
OrthoDB27314
GeneTree (enSembl)ENSG00000137502
Phylogenetic Trees/Animal Genes : TreeFamRAB30
HOVERGENQ15771
HOGENOMQ15771
Homologs : HomoloGeneRAB30
Homology/Alignments : Family Browser (UCSC)RAB30
Gene fusions - Rearrangements
Fusion : MitelmanPRCP/RAB30 [11q14.1/11q14.1]  [t(11;11)(q14;q14)]  
Fusion: TCGAPRCP 11q14.1 RAB30 11q14.1 BRCA
Fusion Cancer (Beijing)RAB30 [11q14.1]  -  PRCP [11q14.1]  [FUSC000500]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB30
dbVarRAB30
ClinVarRAB30
1000_GenomesRAB30 
Exome Variant ServerRAB30
ExAC (Exome Aggregation Consortium)RAB30 (select the gene name)
Genetic variants : HAPMAP27314
Genomic Variants (DGV)RAB30 [DGVbeta]
DECIPHERRAB30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB30 
Mutations
ICGC Data PortalRAB30 
TCGA Data PortalRAB30 
Broad Tumor PortalRAB30
OASIS PortalRAB30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB30
DgiDB (Drug Gene Interaction Database)RAB30
DoCM (Curated mutations)RAB30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB30 (select a term)
intoGenRAB30
Cancer3DRAB30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605693   
Orphanet
MedgenRAB30
Genetic Testing Registry RAB30
NextProtQ15771 [Medical]
TSGene27314
GENETestsRAB30
Target ValidationRAB30
Huge Navigator RAB30 [HugePedia]
snp3D : Map Gene to Disease27314
BioCentury BCIQRAB30
ClinGenRAB30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27314
Chemical/Pharm GKB GenePA34121
Clinical trialRAB30
Miscellaneous
canSAR (ICR)RAB30 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB30
EVEXRAB30
GoPubMedRAB30
iHOPRAB30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:52:07 CEST 2017

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