Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RAB31 (RAB31, member RAS oncogene family)

Identity

Other namesRab22B
HGNC (Hugo) RAB31
LocusID (NCBI) 11031
Location 18p11.22
Location_base_pair Starts at 9708228 and ends at 9862553 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB31   9771
Cards
Entrez_Gene (NCBI)RAB31  11031  RAB31, member RAS oncogene family
GeneCards (Weizmann)RAB31
Ensembl (Hinxton)ENSG00000168461 [Gene_View]  chr18:9708228-9862553 [Contig_View]  RAB31 [Vega]
ICGC DataPortalENSG00000168461
cBioPortalRAB31
AceView (NCBI)RAB31
Genatlas (Paris)RAB31
WikiGenes11031
SOURCE (Princeton)NM_006868
Genomic and cartography
GoldenPath (UCSC)RAB31  -  18p11.22   chr18:9708228-9862553 +  18p11.22   [Description]    (hg19-Feb_2009)
EnsemblRAB31 - 18p11.22 [CytoView]
Mapping of homologs : NCBIRAB31 [Mapview]
OMIM605694   
Gene and transcription
Genbank (Entrez)AF183421 AF234995 AF498957 AI198863 AK223505
RefSeq transcript (Entrez)NM_006868
RefSeq genomic (Entrez)AC_000150 NC_000018 NC_018929 NT_010859 NW_001838461 NW_004929409
Consensus coding sequences : CCDS (NCBI)RAB31
Cluster EST : UnigeneHs.744887 [ NCBI ]
CGAP (NCI)Hs.744887
Alternative Splicing : Fast-db (Paris)GSHG0013913
Alternative Splicing GalleryENSG00000168461
Gene ExpressionRAB31 [ NCBI-GEO ]     RAB31 [ SEEK ]   RAB31 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13636 (Uniprot)
NextProtQ13636  [Medical]
With graphics : InterProQ13636
Splice isoforms : SwissVarQ13636 (Swissvar)
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase [organisation]   Small_GTP-bd_dom [organisation]   Small_GTPase [organisation]   Small_GTPase_Rab_type [organisation]  
Related proteins : CluSTrQ13636
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations11031
Blocks (Seattle)Q13636
PDB (SRS)2FG5   
PDB (PDBSum)2FG5   
PDB (IMB)2FG5   
PDB (RSDB)2FG5   
Human Protein AtlasENSG00000168461 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ13636
HPRD05751
IPIIPI00646692   IPI00014376   
Protein Interaction databases
DIP (DOE-UCLA)Q13636
IntAct (EBI)Q13636
FunCoupENSG00000168461
BioGRIDRAB31
InParanoidQ13636
Interologous Interaction database Q13636
IntegromeDBRAB31
STRING (EMBL)RAB31
Ontologies - Pathways
Ontology : AmiGOGTPase activity  GTP binding  early endosome  GTP catabolic process  small GTPase mediated signal transduction  GDP binding  phagocytic vesicle membrane  receptor internalization  trans-Golgi network membrane  cellular response to insulin stimulus  Golgi to plasma membrane protein transport  regulated secretory pathway  phagocytic vesicle  phagosome maturation  
Ontology : EGO-EBIGTPase activity  GTP binding  early endosome  GTP catabolic process  small GTPase mediated signal transduction  GDP binding  phagocytic vesicle membrane  receptor internalization  trans-Golgi network membrane  cellular response to insulin stimulus  Golgi to plasma membrane protein transport  regulated secretory pathway  phagocytic vesicle  phagosome maturation  
Pathways : KEGGEndocytosis   
Protein Interaction DatabaseRAB31
Wikipedia pathwaysRAB31
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RAB31
snp3D : Map Gene to Disease11031
SNP (GeneSNP Utah)RAB31
SNP : HGBaseRAB31
Genetic variants : HAPMAPRAB31
Exome VariantRAB31
1000_GenomesRAB31 
ICGC programENSG00000168461 
Somatic Mutations in Cancer : COSMICRAB31 
CONAN: Copy Number AnalysisRAB31 
Mutations and Diseases : HGMDRAB31
Genomic VariantsRAB31  RAB31 [DGVbeta]
dbVarRAB31
ClinVarRAB31
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM605694   
MedgenRAB31
GENETestsRAB31
Disease Genetic AssociationRAB31
Huge Navigator RAB31 [HugePedia]  RAB31 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRAB31
Homology/Alignments : Family Browser (UCSC)RAB31
Phylogenetic Trees/Animal Genes : TreeFamRAB31
Chemical/Protein Interactions : CTD11031
Chemical/Pharm GKB GenePA34122
Clinical trialRAB31
Cancer Resource (Charite)ENSG00000168461
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineRAB31
iHOPRAB31
OncoSearchRAB31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:12:06 CEST 2014

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