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RAB31 (RAB31, member RAS oncogene family)

Identity

Other namesRab22B
HGNC (Hugo) RAB31
LocusID (NCBI) 11031
Atlas_Id 41978
Location 18p11.22
Location_base_pair Starts at 9708228 and ends at 9862553 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
DLGAP1 18p11.31 / RAB31 18p11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB31   9771
Cards
Entrez_Gene (NCBI)RAB31  11031  RAB31, member RAS oncogene family
GeneCards (Weizmann)RAB31
Ensembl hg19 (Hinxton)ENSG00000168461 [Gene_View]  chr18:9708228-9862553 [Contig_View]  RAB31 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168461 [Gene_View]  chr18:9708228-9862553 [Contig_View]  RAB31 [Vega]
ICGC DataPortalENSG00000168461
TCGA cBioPortalRAB31
AceView (NCBI)RAB31
Genatlas (Paris)RAB31
WikiGenes11031
SOURCE (Princeton)RAB31
Genomic and cartography
GoldenPath hg19 (UCSC)RAB31  -     chr18:9708228-9862553 +  18p11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB31  -     18p11.22   [Description]    (hg38-Dec_2013)
EnsemblRAB31 - 18p11.22 [CytoView hg19]  RAB31 - 18p11.22 [CytoView hg38]
Mapping of homologs : NCBIRAB31 [Mapview hg19]  RAB31 [Mapview hg38]
OMIM605694   
Gene and transcription
Genbank (Entrez)AF183421 AF234995 AF498957 AI198863 AK223505
RefSeq transcript (Entrez)NM_006868
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)RAB31
Cluster EST : UnigeneHs.744887 [ NCBI ]
CGAP (NCI)Hs.744887
Alternative Splicing : Fast-db (Paris)GSHG0013913
Alternative Splicing GalleryENSG00000168461
Gene ExpressionRAB31 [ NCBI-GEO ]     RAB31 [ SEEK ]   RAB31 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)11031
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13636 (Uniprot)
NextProtQ13636  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13636
Splice isoforms : SwissVarQ13636 (Swissvar)
PhosPhoSitePlusQ13636
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations11031
Blocks (Seattle)RAB31
PDB (SRS)2FG5   
PDB (PDBSum)2FG5   
PDB (IMB)2FG5   
PDB (RSDB)2FG5   
Structural Biology KnowledgeBase2FG5   
SCOP (Structural Classification of Proteins)2FG5   
CATH (Classification of proteins structures)2FG5   
Human Protein AtlasENSG00000168461
Peptide AtlasQ13636
HPRD05751
IPIIPI00646692   IPI00014376   
Protein Interaction databases
DIP (DOE-UCLA)Q13636
IntAct (EBI)Q13636
FunCoupENSG00000168461
BioGRIDRAB31
IntegromeDBRAB31
STRING (EMBL)RAB31
ZODIACRAB31
Ontologies - Pathways
QuickGOQ13636
Ontology : AmiGOGTPase activity  GTP binding  early endosome  small GTPase mediated signal transduction  GDP binding  phagocytic vesicle membrane  receptor internalization  trans-Golgi network membrane  cellular response to insulin stimulus  Golgi to plasma membrane protein transport  regulated secretory pathway  phagocytic vesicle  phagosome maturation  
Ontology : EGO-EBIGTPase activity  GTP binding  early endosome  small GTPase mediated signal transduction  GDP binding  phagocytic vesicle membrane  receptor internalization  trans-Golgi network membrane  cellular response to insulin stimulus  Golgi to plasma membrane protein transport  regulated secretory pathway  phagocytic vesicle  phagosome maturation  
Pathways : KEGGEndocytosis   
Protein Interaction DatabaseRAB31
Atlas of Cancer Signalling NetworkRAB31
Wikipedia pathwaysRAB31
Orthology - Evolution
OrthoDB11031
GeneTree (enSembl)ENSG00000168461
Phylogenetic Trees/Animal Genes : TreeFamRAB31
Homologs : HomoloGeneRAB31
Homology/Alignments : Family Browser (UCSC)RAB31
Gene fusions - Rearrangements
Fusion: TCGADLGAP1 18p11.31 RAB31 18p11.22 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerRAB31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB31
dbVarRAB31
ClinVarRAB31
1000_GenomesRAB31 
Exome Variant ServerRAB31
Exome Aggregation Consortium (ExAC)ENSG00000168461
SNP (GeneSNP Utah)RAB31
SNP : HGBaseRAB31
Genetic variants : HAPMAPRAB31
Genomic Variants (DGV)RAB31 [DGVbeta]
Mutations
ICGC Data PortalRAB31 
TCGA Data PortalRAB31 
Tumor PortalRAB31
TCGA Copy Number PortalRAB31
Somatic Mutations in Cancer : COSMICRAB31 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB31
DgiDB (Drug Gene Interaction Database)RAB31
DoCM (Curated mutations)RAB31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB31 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)18:9708228-9862553
CONAN: Copy Number AnalysisRAB31 
Mutations and Diseases : HGMDRAB31
OMIM605694   
MedgenRAB31
NextProtQ13636 [Medical]
TSGene11031
GENETestsRAB31
Huge Navigator RAB31 [HugePedia]  RAB31 [HugeCancerGEM]
snp3D : Map Gene to Disease11031
BioCentury BCIQRAB31
General knowledge
Chemical/Protein Interactions : CTD11031
Chemical/Pharm GKB GenePA34122
Clinical trialRAB31
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB31
GoPubMedRAB31
iHOPRAB31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:21:18 CET 2016

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