Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RAB32 (RAB32, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB32
LocusID (NCBI) 10981
Atlas_Id 41979
Location 6q24.3  [Link to chromosome band 6q24]
Location_base_pair Starts at 146543692 and ends at 146554956 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB32   9772
Cards
Entrez_Gene (NCBI)RAB32  10981  RAB32, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB32
Ensembl hg19 (Hinxton)ENSG00000118508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118508 [Gene_View]  ENSG00000118508 [Sequence]  chr6:146543692-146554956 [Contig_View]  RAB32 [Vega]
ICGC DataPortalENSG00000118508
TCGA cBioPortalRAB32
AceView (NCBI)RAB32
Genatlas (Paris)RAB32
WikiGenes10981
SOURCE (Princeton)RAB32
Genetics Home Reference (NIH)RAB32
Genomic and cartography
GoldenPath hg38 (UCSC)RAB32  -     chr6:146543692-146554956 +  6q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB32  -     6q24.3   [Description]    (hg19-Feb_2009)
EnsemblRAB32 - 6q24.3 [CytoView hg19]  RAB32 - 6q24.3 [CytoView hg38]
Mapping of homologs : NCBIRAB32 [Mapview hg19]  RAB32 [Mapview hg38]
OMIM612906   
Gene and transcription
Genbank (Entrez)AF498958 AK312202 BC015061 BQ018663 BT020016
RefSeq transcript (Entrez)NM_006834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB32
Cluster EST : UnigeneHs.287714 [ NCBI ]
CGAP (NCI)Hs.287714
Alternative Splicing GalleryENSG00000118508
Gene ExpressionRAB32 [ NCBI-GEO ]   RAB32 [ EBI - ARRAY_EXPRESS ]   RAB32 [ SEEK ]   RAB32 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10981
GTEX Portal (Tissue expression)RAB32
Human Protein AtlasENSG00000118508-RAB32 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13637   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13637  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13637
Splice isoforms : SwissVarQ13637
PhosPhoSitePlusQ13637
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Rab29/Rab38/Rab32    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB32
DMDM Disease mutations10981
Blocks (Seattle)RAB32
PDB (SRS)4CYM    4CZ2    5OEC    5OED   
PDB (PDBSum)4CYM    4CZ2    5OEC    5OED   
PDB (IMB)4CYM    4CZ2    5OEC    5OED   
PDB (RSDB)4CYM    4CZ2    5OEC    5OED   
Structural Biology KnowledgeBase4CYM    4CZ2    5OEC    5OED   
SCOP (Structural Classification of Proteins)4CYM    4CZ2    5OEC    5OED   
CATH (Classification of proteins structures)4CYM    4CZ2    5OEC    5OED   
SuperfamilyQ13637
Human Protein Atlas [tissue]ENSG00000118508-RAB32 [tissue]
Peptide AtlasQ13637
HPRD06700
IPIIPI00014377   
Protein Interaction databases
DIP (DOE-UCLA)Q13637
IntAct (EBI)Q13637
FunCoupENSG00000118508
BioGRIDRAB32
STRING (EMBL)RAB32
ZODIACRAB32
Ontologies - Pathways
QuickGOQ13637
Ontology : AmiGOGTPase activity  GTPase activity  protein binding  GTP binding  mitochondrion  mitochondrion  mitochondrial outer membrane  early endosome  endoplasmic reticulum  trans-Golgi network  cytosol  intracellular protein transport  mitochondrion organization  membrane  vesicle-mediated transport  antigen processing and presentation  phagocytic vesicle membrane  GTP-dependent protein binding  early endosome lumen  Rab protein signal transduction  melanosome membrane  melanosome membrane  AP-2 adaptor complex binding  endosome to melanosome transport  AP-1 adaptor complex binding  AP-3 adaptor complex binding  BLOC-2 complex binding  melanosome  melanosome  Mitochondria-associated ER Membrane  phagocytic vesicle  protein localization to membrane  phagosome maturation  melanosome assembly  melanosome assembly  
Ontology : EGO-EBIGTPase activity  GTPase activity  protein binding  GTP binding  mitochondrion  mitochondrion  mitochondrial outer membrane  early endosome  endoplasmic reticulum  trans-Golgi network  cytosol  intracellular protein transport  mitochondrion organization  membrane  vesicle-mediated transport  antigen processing and presentation  phagocytic vesicle membrane  GTP-dependent protein binding  early endosome lumen  Rab protein signal transduction  melanosome membrane  melanosome membrane  AP-2 adaptor complex binding  endosome to melanosome transport  AP-1 adaptor complex binding  AP-3 adaptor complex binding  BLOC-2 complex binding  melanosome  melanosome  Mitochondria-associated ER Membrane  phagocytic vesicle  protein localization to membrane  phagosome maturation  melanosome assembly  melanosome assembly  
NDEx NetworkRAB32
Atlas of Cancer Signalling NetworkRAB32
Wikipedia pathwaysRAB32
Orthology - Evolution
OrthoDB10981
GeneTree (enSembl)ENSG00000118508
Phylogenetic Trees/Animal Genes : TreeFamRAB32
HOVERGENQ13637
HOGENOMQ13637
Homologs : HomoloGeneRAB32
Homology/Alignments : Family Browser (UCSC)RAB32
Gene fusions - Rearrangements
Fusion : QuiverRAB32
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB32
dbVarRAB32
ClinVarRAB32
1000_GenomesRAB32 
Exome Variant ServerRAB32
ExAC (Exome Aggregation Consortium)ENSG00000118508
GNOMAD BrowserENSG00000118508
Varsome BrowserRAB32
Genetic variants : HAPMAP10981
Genomic Variants (DGV)RAB32 [DGVbeta]
DECIPHERRAB32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB32 
Mutations
ICGC Data PortalRAB32 
TCGA Data PortalRAB32 
Broad Tumor PortalRAB32
OASIS PortalRAB32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RAB32
DgiDB (Drug Gene Interaction Database)RAB32
DoCM (Curated mutations)RAB32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB32 (select a term)
intoGenRAB32
Cancer3DRAB32(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612906   
Orphanet
DisGeNETRAB32
MedgenRAB32
Genetic Testing Registry RAB32
NextProtQ13637 [Medical]
TSGene10981
GENETestsRAB32
Target ValidationRAB32
Huge Navigator RAB32 [HugePedia]
snp3D : Map Gene to Disease10981
BioCentury BCIQRAB32
ClinGenRAB32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10981
Chemical/Pharm GKB GenePA34123
Clinical trialRAB32
Miscellaneous
canSAR (ICR)RAB32 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB32
EVEXRAB32
GoPubMedRAB32
iHOPRAB32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:33:50 CET 2018

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