Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

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RAB33A (RAB33A, member RAS oncogene family)


Other namesRabS10
HGNC (Hugo) RAB33A
LocusID (NCBI) 9363
Location Xq26.1
Location_base_pair Starts at 129305773 and ends at 129318844 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)RAB33A   9773
Entrez_Gene (NCBI)RAB33A  9363  RAB33A, member RAS oncogene family
GeneCards (Weizmann)RAB33A
Ensembl hg19 (Hinxton)ENSG00000134594 [Gene_View]  chrX:129305773-129318844 [Contig_View]  RAB33A [Vega]
Ensembl hg38 (Hinxton)ENSG00000134594 [Gene_View]  chrX:129305773-129318844 [Contig_View]  RAB33A [Vega]
ICGC DataPortalENSG00000134594
AceView (NCBI)RAB33A
Genatlas (Paris)RAB33A
SOURCE (Princeton)RAB33A
Genomic and cartography
GoldenPath hg19 (UCSC)RAB33A  -     chrX:129305773-129318844 +  Xq26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB33A  -     Xq26.1   [Description]    (hg38-Dec_2013)
EnsemblRAB33A - Xq26.1 [CytoView hg19]  RAB33A - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIRAB33A [Mapview hg19]  RAB33A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF498959 AK094927 BC001157 BC001704 BC009996
RefSeq transcript (Entrez)NM_004794
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012558 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)RAB33A
Cluster EST : UnigeneHs.654356 [ NCBI ]
CGAP (NCI)Hs.654356
Alternative Splicing : Fast-db (Paris)GSHG0031809
Alternative Splicing GalleryENSG00000134594
Gene ExpressionRAB33A [ NCBI-GEO ]     RAB33A [ SEEK ]   RAB33A [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14088 (Uniprot)
NextProtQ14088  [Medical]
With graphics : InterProQ14088
Splice isoforms : SwissVarQ14088 (Swissvar)
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Related proteins : CluSTrQ14088
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations9363
Blocks (Seattle)Q14088
Human Protein AtlasENSG00000134594
Peptide AtlasQ14088
Protein Interaction databases
IntAct (EBI)Q14088
Ontologies - Pathways
Ontology : AmiGOGTPase activity  protein binding  GTP binding  Golgi apparatus  plasma membrane  intracellular protein transport  metabolic process  antigen processing and presentation  Rab protein signal transduction  regulation of autophagic vacuole assembly  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  Golgi apparatus  plasma membrane  intracellular protein transport  metabolic process  antigen processing and presentation  Rab protein signal transduction  regulation of autophagic vacuole assembly  
Protein Interaction DatabaseRAB33A
DoCM (Curated mutations)RAB33A
Wikipedia pathwaysRAB33A
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRAB33A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB33A
Exome Variant ServerRAB33A
SNP (GeneSNP Utah)RAB33A
Genetic variants : HAPMAPRAB33A
Genomic Variants (DGV)RAB33A [DGVbeta]
ICGC Data PortalENSG00000134594 
Somatic Mutations in Cancer : COSMICRAB33A 
CONAN: Copy Number AnalysisRAB33A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)X:129305773-129318844
Mutations and Diseases : HGMDRAB33A
NextProtQ14088 [Medical]
Disease Genetic AssociationRAB33A
Huge Navigator RAB33A [HugePedia]  RAB33A [HugeCancerGEM]
snp3D : Map Gene to Disease9363
DGIdb (Drug Gene Interaction db)RAB33A
General knowledge
Homologs : HomoloGeneRAB33A
Homology/Alignments : Family Browser (UCSC)RAB33A
Phylogenetic Trees/Animal Genes : TreeFamRAB33A
Chemical/Protein Interactions : CTD9363
Chemical/Pharm GKB GenePA34124
Clinical trialRAB33A
Cancer Resource (Charite)ENSG00000134594
Other databases
PubMed15 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:04:46 CET 2015

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