Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

Donate (in US Dollars)


RAB33A (RAB33A, member RAS oncogene family)

Identity

Other namesRabS10
HGNC (Hugo) RAB33A
LocusID (NCBI) 9363
Location Xq26.1
Location_base_pair Starts at 129305773 and ends at 129318844 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB33A   9773
Cards
Entrez_Gene (NCBI)RAB33A  9363  RAB33A, member RAS oncogene family
GeneCards (Weizmann)RAB33A
Ensembl hg19 (Hinxton)ENSG00000134594 [Gene_View]  chrX:129305773-129318844 [Contig_View]  RAB33A [Vega]
Ensembl hg38 (Hinxton)ENSG00000134594 [Gene_View]  chrX:129305773-129318844 [Contig_View]  RAB33A [Vega]
ICGC DataPortalENSG00000134594
cBioPortalRAB33A
AceView (NCBI)RAB33A
Genatlas (Paris)RAB33A
WikiGenes9363
SOURCE (Princeton)RAB33A
Genomic and cartography
GoldenPath hg19 (UCSC)RAB33A  -     chrX:129305773-129318844 +  Xq26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB33A  -     Xq26.1   [Description]    (hg38-Dec_2013)
EnsemblRAB33A - Xq26.1 [CytoView hg19]  RAB33A - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIRAB33A [Mapview hg19]  RAB33A [Mapview hg38]
OMIM300333   
Gene and transcription
Genbank (Entrez)AF498959 AK094927 BC001157 BC001704 BC009996
RefSeq transcript (Entrez)NM_004794
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_012558 NT_011786 NW_001842398 NW_004929446
Consensus coding sequences : CCDS (NCBI)RAB33A
Cluster EST : UnigeneHs.654356 [ NCBI ]
CGAP (NCI)Hs.654356
Alternative Splicing : Fast-db (Paris)GSHG0031809
Alternative Splicing GalleryENSG00000134594
Gene ExpressionRAB33A [ NCBI-GEO ]     RAB33A [ SEEK ]   RAB33A [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14088 (Uniprot)
NextProtQ14088  [Medical]
With graphics : InterProQ14088
Splice isoforms : SwissVarQ14088 (Swissvar)
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Related proteins : CluSTrQ14088
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations9363
Blocks (Seattle)Q14088
Human Protein AtlasENSG00000134594
Peptide AtlasQ14088
HPRD02272
IPIIPI00028517   
Protein Interaction databases
DIP (DOE-UCLA)Q14088
IntAct (EBI)Q14088
FunCoupENSG00000134594
BioGRIDRAB33A
IntegromeDBRAB33A
STRING (EMBL)RAB33A
Ontologies - Pathways
QuickGOQ14088
Ontology : AmiGOGTPase activity  protein binding  GTP binding  plasma membrane  GTP catabolic process  small GTPase mediated signal transduction  protein transport  antigen processing and presentation  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  plasma membrane  GTP catabolic process  small GTPase mediated signal transduction  protein transport  antigen processing and presentation  
Protein Interaction DatabaseRAB33A
DoCM (Curated mutations)RAB33A
Wikipedia pathwaysRAB33A
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRAB33A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB33A
dbVarRAB33A
ClinVarRAB33A
1000_GenomesRAB33A 
Exome Variant ServerRAB33A
SNP (GeneSNP Utah)RAB33A
SNP : HGBaseRAB33A
Genetic variants : HAPMAPRAB33A
Genomic Variants (DGV)RAB33A [DGVbeta]
Mutations
ICGC Data PortalENSG00000134594 
Somatic Mutations in Cancer : COSMICRAB33A 
CONAN: Copy Number AnalysisRAB33A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:129305773-129318844
Mutations and Diseases : HGMDRAB33A
OMIM300333   
MedgenRAB33A
NextProtQ14088 [Medical]
GENETestsRAB33A
Disease Genetic AssociationRAB33A
Huge Navigator RAB33A [HugePedia]  RAB33A [HugeCancerGEM]
snp3D : Map Gene to Disease9363
DGIdb (Drug Gene Interaction db)RAB33A
General knowledge
Homologs : HomoloGeneRAB33A
Homology/Alignments : Family Browser (UCSC)RAB33A
Phylogenetic Trees/Animal Genes : TreeFamRAB33A
Chemical/Protein Interactions : CTD9363
Chemical/Pharm GKB GenePA34124
Clinical trialRAB33A
Cancer Resource (Charite)ENSG00000134594
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineRAB33A
GoPubMedRAB33A
iHOPRAB33A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 18:13:37 CET 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.