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RAB33A (RAB33A, member RAS oncogene family)

Identity

Other namesRabS10
HGNC (Hugo) RAB33A
LocusID (NCBI) 9363
Atlas_Id 41980
Location Xq26.1
Location_base_pair Starts at 129305773 and ends at 129318844 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB33A   9773
Cards
Entrez_Gene (NCBI)RAB33A  9363  RAB33A, member RAS oncogene family
AliasesRabS10
GeneCards (Weizmann)RAB33A
Ensembl hg19 (Hinxton)ENSG00000134594 [Gene_View]  chrX:129305773-129318844 [Contig_View]  RAB33A [Vega]
Ensembl hg38 (Hinxton)ENSG00000134594 [Gene_View]  chrX:129305773-129318844 [Contig_View]  RAB33A [Vega]
ICGC DataPortalENSG00000134594
TCGA cBioPortalRAB33A
AceView (NCBI)RAB33A
Genatlas (Paris)RAB33A
WikiGenes9363
SOURCE (Princeton)RAB33A
Genomic and cartography
GoldenPath hg19 (UCSC)RAB33A  -     chrX:129305773-129318844 +  Xq26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB33A  -     Xq26.1   [Description]    (hg38-Dec_2013)
EnsemblRAB33A - Xq26.1 [CytoView hg19]  RAB33A - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIRAB33A [Mapview hg19]  RAB33A [Mapview hg38]
OMIM300333   
Gene and transcription
Genbank (Entrez)AF498959 AK094927 BC001157 BC001704 BC009996
RefSeq transcript (Entrez)NM_004794
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012558 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)RAB33A
Cluster EST : UnigeneHs.654356 [ NCBI ]
CGAP (NCI)Hs.654356
Alternative Splicing GalleryENSG00000134594
Gene ExpressionRAB33A [ NCBI-GEO ]   RAB33A [ EBI - ARRAY_EXPRESS ]   RAB33A [ SEEK ]   RAB33A [ MEM ]
Gene Expression Viewer (FireBrowse)RAB33A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9363
GTEX Portal (Tissue expression)RAB33A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14088 (Uniprot)
NextProtQ14088  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14088
Splice isoforms : SwissVarQ14088 (Swissvar)
PhosPhoSitePlusQ14088
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations9363
Blocks (Seattle)RAB33A
SuperfamilyQ14088
Human Protein AtlasENSG00000134594
Peptide AtlasQ14088
HPRD02272
IPIIPI00028517   
Protein Interaction databases
DIP (DOE-UCLA)Q14088
IntAct (EBI)Q14088
FunCoupENSG00000134594
BioGRIDRAB33A
STRING (EMBL)RAB33A
ZODIACRAB33A
Ontologies - Pathways
QuickGOQ14088
Ontology : AmiGOGTPase activity  protein binding  GTP binding  intracellular  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  antigen processing and presentation  regulation of autophagosome assembly  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  intracellular  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  antigen processing and presentation  regulation of autophagosome assembly  
NDEx Network
Atlas of Cancer Signalling NetworkRAB33A
Wikipedia pathwaysRAB33A
Orthology - Evolution
OrthoDB9363
GeneTree (enSembl)ENSG00000134594
Phylogenetic Trees/Animal Genes : TreeFamRAB33A
Homologs : HomoloGeneRAB33A
Homology/Alignments : Family Browser (UCSC)RAB33A
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRAB33A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB33A
dbVarRAB33A
ClinVarRAB33A
1000_GenomesRAB33A 
Exome Variant ServerRAB33A
ExAC (Exome Aggregation Consortium)RAB33A (select the gene name)
Genetic variants : HAPMAP9363
Genomic Variants (DGV)RAB33A [DGVbeta]
Mutations
ICGC Data PortalRAB33A 
TCGA Data PortalRAB33A 
Broad Tumor PortalRAB33A
OASIS PortalRAB33A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB33A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RAB33A
DgiDB (Drug Gene Interaction Database)RAB33A
DoCM (Curated mutations)RAB33A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB33A (select a term)
intoGenRAB33A
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:129305773-129318844  ENSG00000134594
CONAN: Copy Number AnalysisRAB33A 
Mutations and Diseases : HGMDRAB33A
OMIM300333   
MedgenRAB33A
Genetic Testing Registry RAB33A
NextProtQ14088 [Medical]
TSGene9363
GENETestsRAB33A
Huge Navigator RAB33A [HugePedia]
snp3D : Map Gene to Disease9363
BioCentury BCIQRAB33A
ClinGenRAB33A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9363
Chemical/Pharm GKB GenePA34124
Clinical trialRAB33A
Miscellaneous
canSAR (ICR)RAB33A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB33A
EVEXRAB33A
GoPubMedRAB33A
iHOPRAB33A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:17:59 CEST 2016

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