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RAB33B (RAB33B, member RAS oncogene family)

Identity

Alias_symbol (synonym)DKFZP434G099
Other aliasSMC2
HGNC (Hugo) RAB33B
LocusID (NCBI) 83452
Atlas_Id 41981
Location 4q31.1  [Link to chromosome band 4q31]
Location_base_pair Starts at 139453807 and ends at 139475915 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAB33B (4q31.1) / RAB33B (4q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB33B   16075
Cards
Entrez_Gene (NCBI)RAB33B  83452  RAB33B, member RAS oncogene family
AliasesSMC2
GeneCards (Weizmann)RAB33B
Ensembl hg19 (Hinxton)ENSG00000172007 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172007 [Gene_View]  chr4:139453807-139475915 [Contig_View]  RAB33B [Vega]
ICGC DataPortalENSG00000172007
TCGA cBioPortalRAB33B
AceView (NCBI)RAB33B
Genatlas (Paris)RAB33B
WikiGenes83452
SOURCE (Princeton)RAB33B
Genetics Home Reference (NIH)RAB33B
Genomic and cartography
GoldenPath hg38 (UCSC)RAB33B  -     chr4:139453807-139475915 +  4q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB33B  -     4q31.1   [Description]    (hg19-Feb_2009)
EnsemblRAB33B - 4q31.1 [CytoView hg19]  RAB33B - 4q31.1 [CytoView hg38]
Mapping of homologs : NCBIRAB33B [Mapview hg19]  RAB33B [Mapview hg38]
OMIM605950   615222   
Gene and transcription
Genbank (Entrez)AF350420 AK313685 AL136904 BC036064 BC111977
RefSeq transcript (Entrez)NM_031296
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB33B
Cluster EST : UnigeneHs.591679 [ NCBI ]
CGAP (NCI)Hs.591679
Alternative Splicing GalleryENSG00000172007
Gene ExpressionRAB33B [ NCBI-GEO ]   RAB33B [ EBI - ARRAY_EXPRESS ]   RAB33B [ SEEK ]   RAB33B [ MEM ]
Gene Expression Viewer (FireBrowse)RAB33B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83452
GTEX Portal (Tissue expression)RAB33B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H082   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H082  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H082
Splice isoforms : SwissVarQ9H082
PhosPhoSitePlusQ9H082
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB33B
DMDM Disease mutations83452
Blocks (Seattle)RAB33B
SuperfamilyQ9H082
Human Protein AtlasENSG00000172007
Peptide AtlasQ9H082
HPRD05808
IPIIPI00021475   
Protein Interaction databases
DIP (DOE-UCLA)Q9H082
IntAct (EBI)Q9H082
FunCoupENSG00000172007
BioGRIDRAB33B
STRING (EMBL)RAB33B
ZODIACRAB33B
Ontologies - Pathways
QuickGOQ9H082
Ontology : AmiGOprotein targeting to Golgi  protein targeting to Golgi  Golgi membrane  regulation of cell growth  GTPase activity  protein binding  GTP binding  Golgi apparatus  Golgi lumen  intra-Golgi vesicle-mediated transport  autophagy  skeletal system morphogenesis  regulation of epithelial cell proliferation  extracellular exosome  regulation of Golgi organization  negative regulation of constitutive secretory pathway  regulation of retrograde vesicle-mediated transport, Golgi to ER  regulation of autophagosome assembly  
Ontology : EGO-EBIprotein targeting to Golgi  protein targeting to Golgi  Golgi membrane  regulation of cell growth  GTPase activity  protein binding  GTP binding  Golgi apparatus  Golgi lumen  intra-Golgi vesicle-mediated transport  autophagy  skeletal system morphogenesis  regulation of epithelial cell proliferation  extracellular exosome  regulation of Golgi organization  negative regulation of constitutive secretory pathway  regulation of retrograde vesicle-mediated transport, Golgi to ER  regulation of autophagosome assembly  
NDEx NetworkRAB33B
Atlas of Cancer Signalling NetworkRAB33B
Wikipedia pathwaysRAB33B
Orthology - Evolution
OrthoDB83452
GeneTree (enSembl)ENSG00000172007
Phylogenetic Trees/Animal Genes : TreeFamRAB33B
HOVERGENQ9H082
HOGENOMQ9H082
Homologs : HomoloGeneRAB33B
Homology/Alignments : Family Browser (UCSC)RAB33B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB33B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB33B
dbVarRAB33B
ClinVarRAB33B
1000_GenomesRAB33B 
Exome Variant ServerRAB33B
ExAC (Exome Aggregation Consortium)RAB33B (select the gene name)
Genetic variants : HAPMAP83452
Genomic Variants (DGV)RAB33B [DGVbeta]
DECIPHERRAB33B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB33B 
Mutations
ICGC Data PortalRAB33B 
TCGA Data PortalRAB33B 
Broad Tumor PortalRAB33B
OASIS PortalRAB33B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB33B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB33B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB33B
DgiDB (Drug Gene Interaction Database)RAB33B
DoCM (Curated mutations)RAB33B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB33B (select a term)
intoGenRAB33B
Cancer3DRAB33B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605950    615222   
Orphanet18019   
MedgenRAB33B
Genetic Testing Registry RAB33B
NextProtQ9H082 [Medical]
TSGene83452
GENETestsRAB33B
Target ValidationRAB33B
Huge Navigator RAB33B [HugePedia]
snp3D : Map Gene to Disease83452
BioCentury BCIQRAB33B
ClinGenRAB33B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83452
Chemical/Pharm GKB GenePA34125
Clinical trialRAB33B
Miscellaneous
canSAR (ICR)RAB33B (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB33B
EVEXRAB33B
GoPubMedRAB33B
iHOPRAB33B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:04 CEST 2017

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