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RAB34 (RAB34, member RAS oncogene family)

Identity

Other namesRAB39
RAH
HGNC (Hugo) RAB34
LocusID (NCBI) 83871
Location 17q11.2
Location_base_pair Starts at 27041299 and ends at 27045286 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB34   16519
Cards
Entrez_Gene (NCBI)RAB34  83871  RAB34, member RAS oncogene family
GeneCards (Weizmann)RAB34
Ensembl hg19 (Hinxton)ENSG00000109113 [Gene_View]  chr17:27041299-27045286 [Contig_View]  RAB34 [Vega]
Ensembl hg38 (Hinxton)ENSG00000109113 [Gene_View]  chr17:27041299-27045286 [Contig_View]  RAB34 [Vega]
ICGC DataPortalENSG00000109113
cBioPortalRAB34
AceView (NCBI)RAB34
Genatlas (Paris)RAB34
WikiGenes83871
SOURCE (Princeton)RAB34
Genomic and cartography
GoldenPath hg19 (UCSC)RAB34  -     chr17:27041299-27045286 -  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB34  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblRAB34 - 17q11.2 [CytoView hg19]  RAB34 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIRAB34 [Mapview hg19]  RAB34 [Mapview hg38]
OMIM610917   
Gene and transcription
Genbank (Entrez)AF322067 AF327350 AJ277106 AK027312 AK074689
RefSeq transcript (Entrez)NM_001142624 NM_001142625 NM_001144942 NM_001144943 NM_001256276 NM_001256277 NM_001256278 NM_031934
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838430 NW_004929407
Consensus coding sequences : CCDS (NCBI)RAB34
Cluster EST : UnigeneHs.301853 [ NCBI ]
CGAP (NCI)Hs.301853
Alternative Splicing : Fast-db (Paris)GSHG0013221
Alternative Splicing GalleryENSG00000109113
Gene ExpressionRAB34 [ NCBI-GEO ]     RAB34 [ SEEK ]   RAB34 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZG1 (Uniprot)
NextProtQ9BZG1  [Medical]
With graphics : InterProQ9BZG1
Splice isoforms : SwissVarQ9BZG1 (Swissvar)
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Related proteins : CluSTrQ9BZG1
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations83871
Blocks (Seattle)Q9BZG1
Human Protein AtlasENSG00000109113
Peptide AtlasQ9BZG1
HPRD06701
IPIIPI01024802   IPI00328180   IPI00410673   IPI00788998   IPI00790959   IPI00793155   IPI00796900   IPI00797402   IPI00908406   IPI00927142   IPI00927733   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZG1
IntAct (EBI)Q9BZG1
FunCoupENSG00000109113
BioGRIDRAB34
IntegromeDBRAB34
STRING (EMBL)RAB34
Ontologies - Pathways
QuickGOQ9BZG1
Ontology : AmiGOprotein binding  GTP binding  Golgi apparatus  Golgi stack  small GTPase mediated signal transduction  antigen processing and presentation  phagocytic vesicle membrane  vesicle  Golgi cisterna  lysosome localization  ruffle membrane  Golgi to plasma membrane protein transport  macropinocytosis  phagocytic vesicle  perinuclear region of cytoplasm  extracellular vesicular exosome  protein localization to plasma membrane  phagosome maturation  phagosome-lysosome fusion  
Ontology : EGO-EBIprotein binding  GTP binding  Golgi apparatus  Golgi stack  small GTPase mediated signal transduction  antigen processing and presentation  phagocytic vesicle membrane  vesicle  Golgi cisterna  lysosome localization  ruffle membrane  Golgi to plasma membrane protein transport  macropinocytosis  phagocytic vesicle  perinuclear region of cytoplasm  extracellular vesicular exosome  protein localization to plasma membrane  phagosome maturation  phagosome-lysosome fusion  
Protein Interaction DatabaseRAB34
DoCM (Curated mutations)RAB34
Wikipedia pathwaysRAB34
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRAB34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB34
dbVarRAB34
ClinVarRAB34
1000_GenomesRAB34 
Exome Variant ServerRAB34
SNP (GeneSNP Utah)RAB34
SNP : HGBaseRAB34
Genetic variants : HAPMAPRAB34
Genomic VariantsRAB34  RAB34 [DGVbeta]
Mutations
ICGC Data PortalENSG00000109113 
Somatic Mutations in Cancer : COSMICRAB34 
CONAN: Copy Number AnalysisRAB34 
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:27041299-27045286
Mutations and Diseases : HGMDRAB34
OMIM610917   
MedgenRAB34
NextProtQ9BZG1 [Medical]
GENETestsRAB34
Disease Genetic AssociationRAB34
Huge Navigator RAB34 [HugePedia]  RAB34 [HugeCancerGEM]
snp3D : Map Gene to Disease83871
DGIdb (Drug Gene Interaction db)RAB34
General knowledge
Homologs : HomoloGeneRAB34
Homology/Alignments : Family Browser (UCSC)RAB34
Phylogenetic Trees/Animal Genes : TreeFamRAB34
Chemical/Protein Interactions : CTD83871
Chemical/Pharm GKB GenePA34126
Clinical trialRAB34
Cancer Resource (Charite)ENSG00000109113
Other databases
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
CoreMineRAB34
GoPubMedRAB34
iHOPRAB34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:04:52 CET 2014

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