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RAB34 (RAB34, member RAS oncogene family)

Identity

Alias (NCBI)NARR
RAB39
RAH
HGNC (Hugo) RAB34
HGNC Alias symbRAB39
RAH
NARR
HGNC Alias namenine-amino acid residue-repeats
LocusID (NCBI) 83871
Atlas_Id 41982
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28714284 and ends at 28717868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAB34 (17q11.2) / NEK8 (17q11.2)RAB34 (17q11.2) / RAB34 (17q11.2)RAB34 (17q11.2) / TECTA (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RAB34   16519
Cards
Entrez_Gene (NCBI)RAB34    RAB34, member RAS oncogene family
AliasesNARR; RAB39; RAH
GeneCards (Weizmann)RAB34
Ensembl hg19 (Hinxton)ENSG00000109113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109113 [Gene_View]  ENSG00000109113 [Sequence]  chr17:28714284-28717868 [Contig_View]  RAB34 [Vega]
ICGC DataPortalENSG00000109113
TCGA cBioPortalRAB34
AceView (NCBI)RAB34
Genatlas (Paris)RAB34
SOURCE (Princeton)RAB34
Genetics Home Reference (NIH)RAB34
Genomic and cartography
GoldenPath hg38 (UCSC)RAB34  -     chr17:28714284-28717868 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB34  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathRAB34 - 17q11.2 [CytoView hg19]  RAB34 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000109113
Genome Data Viewer NCBIRAB34 [Mapview hg19]  
OMIM610917   
Gene and transcription
Genbank (Entrez)AF322067 AF327350 AJ277106 AK027312 AK074689
RefSeq transcript (Entrez)NM_001142624 NM_001142625 NM_001144942 NM_001144943 NM_001256276 NM_001256277 NM_001256278 NM_001256281 NM_031934
Consensus coding sequences : CCDS (NCBI)RAB34
Gene ExpressionRAB34 [ NCBI-GEO ]   RAB34 [ EBI - ARRAY_EXPRESS ]   RAB34 [ SEEK ]   RAB34 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB34 [ Firebrowse - Broad ]
GenevisibleExpression of RAB34 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83871
GTEX Portal (Tissue expression)RAB34
Human Protein AtlasENSG00000109113-RAB34 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZG1
PhosPhoSitePlusQ9BZG1
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB34
SuperfamilyQ9BZG1
AlphaFold pdb e-kbQ9BZG1   
Human Protein Atlas [tissue]ENSG00000109113-RAB34 [tissue]
HPRD06701
Protein Interaction databases
DIP (DOE-UCLA)Q9BZG1
IntAct (EBI)Q9BZG1
BioGRIDRAB34
STRING (EMBL)RAB34
ZODIACRAB34
Ontologies - Pathways
QuickGOQ9BZG1
Ontology : AmiGOGTPase activity  protein binding  GTP binding  Golgi apparatus  Golgi stack  cilium  endocytosis  antigen processing and presentation  cell projection organization  phagocytic vesicle membrane  GTP-dependent protein binding  small GTPase binding  vesicle  Golgi cisterna  lysosome localization  ruffle membrane  Golgi to plasma membrane protein transport  macropinocytosis  phagocytic vesicle  positive regulation of smoothened signaling pathway  perinuclear region of cytoplasm  extracellular exosome  protein localization to plasma membrane  phagosome maturation  phagosome-lysosome fusion  phagosome-lysosome fusion  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  Golgi apparatus  Golgi stack  cilium  endocytosis  antigen processing and presentation  cell projection organization  phagocytic vesicle membrane  GTP-dependent protein binding  small GTPase binding  vesicle  Golgi cisterna  lysosome localization  ruffle membrane  Golgi to plasma membrane protein transport  macropinocytosis  phagocytic vesicle  positive regulation of smoothened signaling pathway  perinuclear region of cytoplasm  extracellular exosome  protein localization to plasma membrane  phagosome maturation  phagosome-lysosome fusion  phagosome-lysosome fusion  
NDEx NetworkRAB34
Atlas of Cancer Signalling NetworkRAB34
Wikipedia pathwaysRAB34
Orthology - Evolution
OrthoDB83871
GeneTree (enSembl)ENSG00000109113
Phylogenetic Trees/Animal Genes : TreeFamRAB34
Homologs : HomoloGeneRAB34
Homology/Alignments : Family Browser (UCSC)RAB34
Gene fusions - Rearrangements
Fusion : QuiverRAB34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB34
dbVarRAB34
ClinVarRAB34
MonarchRAB34
1000_GenomesRAB34 
Exome Variant ServerRAB34
GNOMAD BrowserENSG00000109113
Varsome BrowserRAB34
ACMGRAB34 variants
VarityQ9BZG1
Genomic Variants (DGV)RAB34 [DGVbeta]
DECIPHERRAB34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB34 
Mutations
ICGC Data PortalRAB34 
TCGA Data PortalRAB34 
Broad Tumor PortalRAB34
OASIS PortalRAB34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB34  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB34
Mutations and Diseases : HGMDRAB34
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRAB34
DgiDB (Drug Gene Interaction Database)RAB34
DoCM (Curated mutations)RAB34
CIViC (Clinical Interpretations of Variants in Cancer)RAB34
Cancer3DRAB34
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610917   
Orphanet
DisGeNETRAB34
MedgenRAB34
Genetic Testing Registry RAB34
NextProtQ9BZG1 [Medical]
GENETestsRAB34
Target ValidationRAB34
Huge Navigator RAB34 [HugePedia]
ClinGenRAB34
Clinical trials, drugs, therapy
MyCancerGenomeRAB34
Protein Interactions : CTDRAB34
Pharm GKB GenePA34126
PharosQ9BZG1
Clinical trialRAB34
Miscellaneous
canSAR (ICR)RAB34
HarmonizomeRAB34
DataMed IndexRAB34
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRAB34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:51 CEST 2021

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