Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RAB35 (RAB35, member RAS oncogene family)

Identity

Alias_symbol (synonym)H-ray
Other aliasRAB1C
RAY
HGNC (Hugo) RAB35
LocusID (NCBI) 11021
Atlas_Id 41983
Location 12q24.23  [Link to chromosome band 12q24]
Location_base_pair Starts at 120095095 and ends at 120116839 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C9orf3 (9q22.32) / RAB35 (12q24.23)RAB35 (12q24.23) / SLC25A36 (3q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB35   9774
Cards
Entrez_Gene (NCBI)RAB35  11021  RAB35, member RAS oncogene family
AliasesH-ray; RAB1C; RAY
GeneCards (Weizmann)RAB35
Ensembl hg19 (Hinxton)ENSG00000111737 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111737 [Gene_View]  ENSG00000111737 [Sequence]  chr12:120095095-120116839 [Contig_View]  RAB35 [Vega]
ICGC DataPortalENSG00000111737
TCGA cBioPortalRAB35
AceView (NCBI)RAB35
Genatlas (Paris)RAB35
WikiGenes11021
SOURCE (Princeton)RAB35
Genetics Home Reference (NIH)RAB35
Genomic and cartography
GoldenPath hg38 (UCSC)RAB35  -     chr12:120095095-120116839 -  12q24.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB35  -     12q24.23   [Description]    (hg19-Feb_2009)
EnsemblRAB35 - 12q24.23 [CytoView hg19]  RAB35 - 12q24.23 [CytoView hg38]
Mapping of homologs : NCBIRAB35 [Mapview hg19]  RAB35 [Mapview hg38]
OMIM604199   
Gene and transcription
Genbank (Entrez)AF498960 AI042456 AK001309 AK125543 AK298391
RefSeq transcript (Entrez)NM_001167606 NM_006861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB35
Cluster EST : UnigeneHs.524788 [ NCBI ]
CGAP (NCI)Hs.524788
Alternative Splicing GalleryENSG00000111737
Gene ExpressionRAB35 [ NCBI-GEO ]   RAB35 [ EBI - ARRAY_EXPRESS ]   RAB35 [ SEEK ]   RAB35 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11021
GTEX Portal (Tissue expression)RAB35
Human Protein AtlasENSG00000111737-RAB35 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15286   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15286  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15286
Splice isoforms : SwissVarQ15286
PhosPhoSitePlusQ15286
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB35
DMDM Disease mutations11021
Blocks (Seattle)RAB35
PDB (SRS)3TW8   
PDB (PDBSum)3TW8   
PDB (IMB)3TW8   
PDB (RSDB)3TW8   
Structural Biology KnowledgeBase3TW8   
SCOP (Structural Classification of Proteins)3TW8   
CATH (Classification of proteins structures)3TW8   
SuperfamilyQ15286
Human Protein Atlas [tissue]ENSG00000111737-RAB35 [tissue]
Peptide AtlasQ15286
HPRD05010
IPIIPI00300096   IPI00791123   IPI00910398   IPI00983997   IPI01013564   IPI00953892   IPI01012847   
Protein Interaction databases
DIP (DOE-UCLA)Q15286
IntAct (EBI)Q15286
FunCoupENSG00000111737
BioGRIDRAB35
STRING (EMBL)RAB35
ZODIACRAB35
Ontologies - Pathways
QuickGOQ15286
Ontology : AmiGOGolgi membrane  mitotic cytokinesis  GTPase activity  GTPase activity  GTPase activity  protein binding  GTP binding  phosphatidylinositol-4,5-bisphosphate binding  cytosol  plasma membrane  plasma membrane  clathrin-coated pit  intracellular protein transport  protein localization  endosome membrane  endosome membrane  endosomal transport  GDP binding  antigen processing and presentation  clathrin-coated vesicle membrane  neuron projection development  cell projection membrane  endocytic recycling  Rab protein signal transduction  protein localization to endosome  melanosome  intercellular bridge  clathrin-coated endocytic vesicle  plasma membrane to endosome transport  recycling endosome membrane  extracellular exosome  anchored component of synaptic vesicle membrane  cellular response to nerve growth factor stimulus  
Ontology : EGO-EBIGolgi membrane  mitotic cytokinesis  GTPase activity  GTPase activity  GTPase activity  protein binding  GTP binding  phosphatidylinositol-4,5-bisphosphate binding  cytosol  plasma membrane  plasma membrane  clathrin-coated pit  intracellular protein transport  protein localization  endosome membrane  endosome membrane  endosomal transport  GDP binding  antigen processing and presentation  clathrin-coated vesicle membrane  neuron projection development  cell projection membrane  endocytic recycling  Rab protein signal transduction  protein localization to endosome  melanosome  intercellular bridge  clathrin-coated endocytic vesicle  plasma membrane to endosome transport  recycling endosome membrane  extracellular exosome  anchored component of synaptic vesicle membrane  cellular response to nerve growth factor stimulus  
NDEx NetworkRAB35
Atlas of Cancer Signalling NetworkRAB35
Wikipedia pathwaysRAB35
Orthology - Evolution
OrthoDB11021
GeneTree (enSembl)ENSG00000111737
Phylogenetic Trees/Animal Genes : TreeFamRAB35
HOVERGENQ15286
HOGENOMQ15286
Homologs : HomoloGeneRAB35
Homology/Alignments : Family Browser (UCSC)RAB35
Gene fusions - Rearrangements
Fusion : QuiverRAB35
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB35
dbVarRAB35
ClinVarRAB35
1000_GenomesRAB35 
Exome Variant ServerRAB35
ExAC (Exome Aggregation Consortium)ENSG00000111737
GNOMAD BrowserENSG00000111737
Varsome BrowserRAB35
Genetic variants : HAPMAP11021
Genomic Variants (DGV)RAB35 [DGVbeta]
DECIPHERRAB35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB35 
Mutations
ICGC Data PortalRAB35 
TCGA Data PortalRAB35 
Broad Tumor PortalRAB35
OASIS PortalRAB35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RAB35
DgiDB (Drug Gene Interaction Database)RAB35
DoCM (Curated mutations)RAB35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB35 (select a term)
intoGenRAB35
Cancer3DRAB35(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604199   
Orphanet
DisGeNETRAB35
MedgenRAB35
Genetic Testing Registry RAB35
NextProtQ15286 [Medical]
TSGene11021
GENETestsRAB35
Target ValidationRAB35
Huge Navigator RAB35 [HugePedia]
snp3D : Map Gene to Disease11021
BioCentury BCIQRAB35
ClinGenRAB35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11021
Chemical/Pharm GKB GenePA34127
Clinical trialRAB35
Miscellaneous
canSAR (ICR)RAB35 (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB35
EVEXRAB35
GoPubMedRAB35
iHOPRAB35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:33:51 CET 2018

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