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RAB36 (RAB36, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB36
LocusID (NCBI) 9609
Atlas_Id 41984
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 23145324 and ends at 23165643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAB36 (22q11.22) / TMSB10 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB36   9775
Cards
Entrez_Gene (NCBI)RAB36  9609  RAB36, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB36
Ensembl hg19 (Hinxton)ENSG00000100228 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100228 [Gene_View]  chr22:23145324-23165643 [Contig_View]  RAB36 [Vega]
ICGC DataPortalENSG00000100228
TCGA cBioPortalRAB36
AceView (NCBI)RAB36
Genatlas (Paris)RAB36
WikiGenes9609
SOURCE (Princeton)RAB36
Genetics Home Reference (NIH)RAB36
Genomic and cartography
GoldenPath hg38 (UCSC)RAB36  -     chr22:23145324-23165643 +  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB36  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblRAB36 - 22q11.23 [CytoView hg19]  RAB36 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIRAB36 [Mapview hg19]  RAB36 [Mapview hg38]
OMIM605662   
Gene and transcription
Genbank (Entrez)AB023061 AF133588 AK296052 AY336745 BC017436
RefSeq transcript (Entrez)NM_001349877 NM_001349878 NM_004914
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB36
Cluster EST : UnigeneHs.369557 [ NCBI ]
CGAP (NCI)Hs.369557
Alternative Splicing GalleryENSG00000100228
Gene ExpressionRAB36 [ NCBI-GEO ]   RAB36 [ EBI - ARRAY_EXPRESS ]   RAB36 [ SEEK ]   RAB36 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9609
GTEX Portal (Tissue expression)RAB36
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95755   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95755  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95755
Splice isoforms : SwissVarO95755
PhosPhoSitePlusO95755
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB36
DMDM Disease mutations9609
Blocks (Seattle)RAB36
SuperfamilyO95755
Human Protein AtlasENSG00000100228
Peptide AtlasO95755
HPRD05743
IPIIPI00032916   IPI00410116   IPI00909855   IPI00879864   
Protein Interaction databases
DIP (DOE-UCLA)O95755
IntAct (EBI)O95755
FunCoupENSG00000100228
BioGRIDRAB36
STRING (EMBL)RAB36
ZODIACRAB36
Ontologies - Pathways
QuickGOO95755
Ontology : AmiGOGolgi membrane  GTPase activity  GTP binding  Golgi apparatus  protein transport  
Ontology : EGO-EBIGolgi membrane  GTPase activity  GTP binding  Golgi apparatus  protein transport  
NDEx NetworkRAB36
Atlas of Cancer Signalling NetworkRAB36
Wikipedia pathwaysRAB36
Orthology - Evolution
OrthoDB9609
GeneTree (enSembl)ENSG00000100228
Phylogenetic Trees/Animal Genes : TreeFamRAB36
HOVERGENO95755
HOGENOMO95755
Homologs : HomoloGeneRAB36
Homology/Alignments : Family Browser (UCSC)RAB36
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB36
dbVarRAB36
ClinVarRAB36
1000_GenomesRAB36 
Exome Variant ServerRAB36
ExAC (Exome Aggregation Consortium)RAB36 (select the gene name)
Genetic variants : HAPMAP9609
Genomic Variants (DGV)RAB36 [DGVbeta]
DECIPHERRAB36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB36 
Mutations
ICGC Data PortalRAB36 
TCGA Data PortalRAB36 
Broad Tumor PortalRAB36
OASIS PortalRAB36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB36
DgiDB (Drug Gene Interaction Database)RAB36
DoCM (Curated mutations)RAB36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB36 (select a term)
intoGenRAB36
Cancer3DRAB36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605662   
Orphanet
MedgenRAB36
Genetic Testing Registry RAB36
NextProtO95755 [Medical]
TSGene9609
GENETestsRAB36
Huge Navigator RAB36 [HugePedia]
snp3D : Map Gene to Disease9609
BioCentury BCIQRAB36
ClinGenRAB36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9609
Chemical/Pharm GKB GenePA34128
Clinical trialRAB36
Miscellaneous
canSAR (ICR)RAB36 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB36
EVEXRAB36
GoPubMedRAB36
iHOPRAB36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:33:51 CEST 2017

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