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RAB37 (RAB37, member RAS oncogene family)

Identity

Other names-
HGNC (Hugo) RAB37
LocusID (NCBI) 326624
Atlas_Id 41985
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 72733356 and ends at 72743474 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAB37 (17q25.1) / CUX1 (7q22.1)RAB37 (17q25.1) / PDE4D (5q11.2)RAB37 (17q25.1) / STAT3 (17q21.2)
TMEM104 (17q25.1) / RAB37 (17q25.1)TMEM104 17q25.1 / RAB37 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB37   30268
Cards
Entrez_Gene (NCBI)RAB37  326624  RAB37, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB37
Ensembl hg19 (Hinxton)ENSG00000172794 [Gene_View]  chr17:72733356-72743474 [Contig_View]  RAB37 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172794 [Gene_View]  chr17:72733356-72743474 [Contig_View]  RAB37 [Vega]
ICGC DataPortalENSG00000172794
TCGA cBioPortalRAB37
AceView (NCBI)RAB37
Genatlas (Paris)RAB37
WikiGenes326624
SOURCE (Princeton)RAB37
Genomic and cartography
GoldenPath hg19 (UCSC)RAB37  -     chr17:72733356-72743474 +  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB37  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblRAB37 - 17q25.1 [CytoView hg19]  RAB37 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIRAB37 [Mapview hg19]  RAB37 [Mapview hg38]
OMIM609956   
Gene and transcription
Genbank (Entrez)AK054846 AK057069 AK098068 AK127073 AK290202
RefSeq transcript (Entrez)NM_001006637 NM_001006638 NM_001163989 NM_001163990 NM_175738
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)RAB37
Cluster EST : UnigeneHs.351413 [ NCBI ]
CGAP (NCI)Hs.351413
Alternative Splicing GalleryENSG00000172794
Gene ExpressionRAB37 [ NCBI-GEO ]   RAB37 [ EBI - ARRAY_EXPRESS ]   RAB37 [ SEEK ]   RAB37 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)326624
GTEX Portal (Tissue expression)RAB37
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AX2 (Uniprot)
NextProtQ96AX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AX2
Splice isoforms : SwissVarQ96AX2 (Swissvar)
PhosPhoSitePlusQ96AX2
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations326624
Blocks (Seattle)RAB37
SuperfamilyQ96AX2
Human Protein AtlasENSG00000172794
Peptide AtlasQ96AX2
HPRD06702
IPIIPI00073180   IPI00332970   IPI00791421   IPI00789993   IPI00792992   IPI00788648   IPI00790499   IPI00798392   IPI00984582   IPI00985161   
Protein Interaction databases
DIP (DOE-UCLA)Q96AX2
IntAct (EBI)Q96AX2
FunCoupENSG00000172794
BioGRIDRAB37
STRING (EMBL)RAB37
ZODIACRAB37
Ontologies - Pathways
QuickGOQ96AX2
Ontology : AmiGOGTPase activity  protein binding  GTP binding  endoplasmic reticulum-Golgi intermediate compartment  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  membrane  cytoplasmic, membrane-bounded vesicle  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  endoplasmic reticulum-Golgi intermediate compartment  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  membrane  cytoplasmic, membrane-bounded vesicle  
NDEx Network
Atlas of Cancer Signalling NetworkRAB37
Wikipedia pathwaysRAB37
Orthology - Evolution
OrthoDB326624
GeneTree (enSembl)ENSG00000172794
Phylogenetic Trees/Animal Genes : TreeFamRAB37
Homologs : HomoloGeneRAB37
Homology/Alignments : Family Browser (UCSC)RAB37
Gene fusions - Rearrangements
Fusion: TCGATMEM104 17q25.1 RAB37 17q25.1 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerRAB37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB37
dbVarRAB37
ClinVarRAB37
1000_GenomesRAB37 
Exome Variant ServerRAB37
ExAC (Exome Aggregation Consortium)RAB37 (select the gene name)
Genetic variants : HAPMAP326624
Genomic Variants (DGV)RAB37 [DGVbeta]
Mutations
ICGC Data PortalRAB37 
TCGA Data PortalRAB37 
Broad Tumor PortalRAB37
OASIS PortalRAB37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB37 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB37
DgiDB (Drug Gene Interaction Database)RAB37
DoCM (Curated mutations)RAB37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB37 (select a term)
intoGenRAB37
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:72733356-72743474  ENSG00000172794
CONAN: Copy Number AnalysisRAB37 
Mutations and Diseases : HGMDRAB37
OMIM609956   
MedgenRAB37
Genetic Testing Registry RAB37
NextProtQ96AX2 [Medical]
TSGene326624
GENETestsRAB37
Huge Navigator RAB37 [HugePedia]
snp3D : Map Gene to Disease326624
BioCentury BCIQRAB37
ClinGenRAB37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD326624
Chemical/Pharm GKB GenePA134901093
Clinical trialRAB37
Miscellaneous
canSAR (ICR)RAB37 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB37
EVEXRAB37
GoPubMedRAB37
iHOPRAB37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:33:56 CEST 2016

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