Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RAB39A (RAB39A, member RAS oncogene family)

Identity

Alias (NCBI)RAB39
HGNC (Hugo) RAB39A
HGNC Alias namerab-related GTP-binding protein
HGNC Previous nameRAB39
HGNC Previous nameRAB39, member RAS oncogene family
LocusID (NCBI) 54734
Atlas_Id 52497
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 107928448 and ends at 107963482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAB39A (11q22.3) / TECTA (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q22;q23) RAB39A/TECTA

External links

Nomenclature
HGNC (Hugo)RAB39A   16521
Cards
Entrez_Gene (NCBI)RAB39A    RAB39A, member RAS oncogene family
AliasesRAB39
GeneCards (Weizmann)RAB39A
Ensembl hg19 (Hinxton)ENSG00000179331 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179331 [Gene_View]  ENSG00000179331 [Sequence]  chr11:107928448-107963482 [Contig_View]  RAB39A [Vega]
ICGC DataPortalENSG00000179331
TCGA cBioPortalRAB39A
AceView (NCBI)RAB39A
Genatlas (Paris)RAB39A
SOURCE (Princeton)RAB39A
Genetics Home Reference (NIH)RAB39A
Genomic and cartography
GoldenPath hg38 (UCSC)RAB39A  -     chr11:107928448-107963482 +  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB39A  -     11q22.3   [Description]    (hg19-Feb_2009)
GoldenPathRAB39A - 11q22.3 [CytoView hg19]  RAB39A - 11q22.3 [CytoView hg38]
ImmunoBaseENSG00000179331
genome Data Viewer NCBIRAB39A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK292969 BC028064 HY107079 X99962
RefSeq transcript (Entrez)NM_017516
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB39A
Alternative Splicing GalleryENSG00000179331
Gene ExpressionRAB39A [ NCBI-GEO ]   RAB39A [ EBI - ARRAY_EXPRESS ]   RAB39A [ SEEK ]   RAB39A [ MEM ]
Gene Expression Viewer (FireBrowse)RAB39A [ Firebrowse - Broad ]
GenevisibleExpression of RAB39A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54734
GTEX Portal (Tissue expression)RAB39A
Human Protein AtlasENSG00000179331-RAB39A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14964   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14964  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14964
Splice isoforms : SwissVarQ14964
PhosPhoSitePlusQ14964
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Rab39    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB39A
Blocks (Seattle)RAB39A
SuperfamilyQ14964
Human Protein Atlas [tissue]ENSG00000179331-RAB39A [tissue]
Peptide AtlasQ14964
HPRD11470
IPIIPI00001618   
Protein Interaction databases
DIP (DOE-UCLA)Q14964
IntAct (EBI)Q14964
BioGRIDRAB39A
STRING (EMBL)RAB39A
ZODIACRAB39A
Ontologies - Pathways
QuickGOQ14964
Ontology : AmiGOGolgi membrane  Golgi membrane  protein binding  GTP binding  lysosome  Golgi apparatus  cytosol  plasma membrane  autophagy  phagocytic vesicle membrane  phagocytic vesicle  phagosome acidification  phagosome-lysosome fusion  
Ontology : EGO-EBIGolgi membrane  Golgi membrane  protein binding  GTP binding  lysosome  Golgi apparatus  cytosol  plasma membrane  autophagy  phagocytic vesicle membrane  phagocytic vesicle  phagosome acidification  phagosome-lysosome fusion  
NDEx NetworkRAB39A
Atlas of Cancer Signalling NetworkRAB39A
Wikipedia pathwaysRAB39A
Orthology - Evolution
OrthoDB54734
GeneTree (enSembl)ENSG00000179331
Phylogenetic Trees/Animal Genes : TreeFamRAB39A
HOGENOMQ14964
Homologs : HomoloGeneRAB39A
Homology/Alignments : Family Browser (UCSC)RAB39A
Gene fusions - Rearrangements
Fusion : MitelmanRAB39A/TECTA [11q22.3/11q23.3]  
Fusion : QuiverRAB39A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB39A [hg38]
dbVarRAB39A
ClinVarRAB39A
MonarchRAB39A
1000_GenomesRAB39A 
Exome Variant ServerRAB39A
GNOMAD BrowserENSG00000179331
Varsome BrowserRAB39A
Genomic Variants (DGV)RAB39A [DGVbeta]
DECIPHERRAB39A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB39A 
Mutations
ICGC Data PortalRAB39A 
TCGA Data PortalRAB39A 
Broad Tumor PortalRAB39A
OASIS PortalRAB39A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB39A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB39A
Mutations and Diseases : HGMDRAB39A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB39A
DgiDB (Drug Gene Interaction Database)RAB39A
DoCM (Curated mutations)RAB39A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB39A (select a term)
intoGenRAB39A
Cancer3DRAB39A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRAB39A
MedgenRAB39A
Genetic Testing Registry RAB39A
NextProtQ14964 [Medical]
GENETestsRAB39A
Target ValidationRAB39A
Huge Navigator RAB39A [HugePedia]
ClinGenRAB39A
Clinical trials, drugs, therapy
MyCancerGenomeRAB39A
Protein Interactions : CTD
Pharm GKB GenePA34130
PharosQ14964
Clinical trialRAB39A
Miscellaneous
canSAR (ICR)RAB39A (select the gene name)
HarmonizomeRAB39A
DataMed IndexRAB39A
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRAB39A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jan 1 18:34:00 CET 2021
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