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RAB39A (RAB39A, member RAS oncogene family)

Identity

Alias_namesRAB39
RAB39
Other alias
HGNC (Hugo) RAB39A
LocusID (NCBI) 54734
Atlas_Id 52497
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 107928475 and ends at 107963482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		RAB39A (11q22.3) / TECTA (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB39A   16521
Cards
Entrez_Gene (NCBI)RAB39A  54734  RAB39A, member RAS oncogene family
AliasesRAB39
GeneCards (Weizmann)RAB39A
Ensembl hg19 (Hinxton)ENSG00000179331 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179331 [Gene_View]  chr11:107928475-107963482 [Contig_View]  RAB39A [Vega]
ICGC DataPortalENSG00000179331
TCGA cBioPortalRAB39A
AceView (NCBI)RAB39A
Genatlas (Paris)RAB39A
WikiGenes54734
SOURCE (Princeton)RAB39A
Genetics Home Reference (NIH)RAB39A
Genomic and cartography
GoldenPath hg38 (UCSC)RAB39A  -     chr11:107928475-107963482 +  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB39A  -     11q22.3   [Description]    (hg19-Feb_2009)
EnsemblRAB39A - 11q22.3 [CytoView hg19]  RAB39A - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBIRAB39A [Mapview hg19]  RAB39A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292969 BC028064 HY107079 JF432634 X99962
RefSeq transcript (Entrez)NM_017516
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB39A
Cluster EST : UnigeneHs.354906 [ NCBI ]
CGAP (NCI)Hs.354906
Alternative Splicing GalleryENSG00000179331
Gene ExpressionRAB39A [ NCBI-GEO ]   RAB39A [ EBI - ARRAY_EXPRESS ]   RAB39A [ SEEK ]   RAB39A [ MEM ]
Gene Expression Viewer (FireBrowse)RAB39A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54734
GTEX Portal (Tissue expression)RAB39A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14964   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14964  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14964
Splice isoforms : SwissVarQ14964
PhosPhoSitePlusQ14964
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB39A
DMDM Disease mutations54734
Blocks (Seattle)RAB39A
SuperfamilyQ14964
Human Protein AtlasENSG00000179331
Peptide AtlasQ14964
HPRD11470
IPIIPI00001618   
Protein Interaction databases
DIP (DOE-UCLA)Q14964
IntAct (EBI)Q14964
FunCoupENSG00000179331
BioGRIDRAB39A
STRING (EMBL)RAB39A
ZODIACRAB39A
Ontologies - Pathways
QuickGOQ14964
Ontology : AmiGOGolgi membrane  GTPase activity  protein binding  GTP binding  lysosome  Golgi apparatus  cytosol  plasma membrane  autophagy  protein transport  phagocytic vesicle membrane  phagocytic vesicle  membrane organization  phagosome acidification  phagosome-lysosome fusion  
Ontology : EGO-EBIGolgi membrane  GTPase activity  protein binding  GTP binding  lysosome  Golgi apparatus  cytosol  plasma membrane  autophagy  protein transport  phagocytic vesicle membrane  phagocytic vesicle  membrane organization  phagosome acidification  phagosome-lysosome fusion  
NDEx NetworkRAB39A
Atlas of Cancer Signalling NetworkRAB39A
Wikipedia pathwaysRAB39A
Orthology - Evolution
OrthoDB54734
GeneTree (enSembl)ENSG00000179331
Phylogenetic Trees/Animal Genes : TreeFamRAB39A
HOVERGENQ14964
HOGENOMQ14964
Homologs : HomoloGeneRAB39A
Homology/Alignments : Family Browser (UCSC)RAB39A
Gene fusions - Rearrangements
Fusion : MitelmanRAB39A/TECTA [11q22.3/11q23.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB39A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB39A
dbVarRAB39A
ClinVarRAB39A
1000_GenomesRAB39A 
Exome Variant ServerRAB39A
ExAC (Exome Aggregation Consortium)RAB39A (select the gene name)
Genetic variants : HAPMAP54734
Genomic Variants (DGV)RAB39A [DGVbeta]
DECIPHERRAB39A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB39A 
Mutations
ICGC Data PortalRAB39A 
TCGA Data PortalRAB39A 
Broad Tumor PortalRAB39A
OASIS PortalRAB39A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRAB39A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB39A
DgiDB (Drug Gene Interaction Database)RAB39A
DoCM (Curated mutations)RAB39A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB39A (select a term)
intoGenRAB39A
Cancer3DRAB39A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB39A
Genetic Testing Registry RAB39A
NextProtQ14964 [Medical]
TSGene54734
GENETestsRAB39A
Target ValidationRAB39A
Huge Navigator RAB39A [HugePedia]
snp3D : Map Gene to Disease54734
BioCentury BCIQRAB39A
ClinGenRAB39A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54734
Chemical/Pharm GKB GenePA34130
Clinical trialRAB39A
Miscellaneous
canSAR (ICR)RAB39A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB39A
EVEXRAB39A
GoPubMedRAB39A
iHOPRAB39A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:12:20 CEST 2017
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