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RAB39B (RAB39B, member RAS oncogene family)

Identity

Alias_namesMRX72
mental retardation
Other aliasWSMN
HGNC (Hugo) RAB39B
LocusID (NCBI) 116442
Atlas_Id 41988
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 155258234 and ends at 155264589 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB39B   16499
Cards
Entrez_Gene (NCBI)RAB39B  116442  RAB39B, member RAS oncogene family
AliasesMRX72; WSMN
GeneCards (Weizmann)RAB39B
Ensembl hg19 (Hinxton)ENSG00000155961 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155961 [Gene_View]  chrX:155258234-155264589 [Contig_View]  RAB39B [Vega]
ICGC DataPortalENSG00000155961
TCGA cBioPortalRAB39B
AceView (NCBI)RAB39B
Genatlas (Paris)RAB39B
WikiGenes116442
SOURCE (Princeton)RAB39B
Genetics Home Reference (NIH)RAB39B
Genomic and cartography
GoldenPath hg38 (UCSC)RAB39B  -     chrX:155258234-155264589 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB39B  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblRAB39B - Xq28 [CytoView hg19]  RAB39B - Xq28 [CytoView hg38]
Mapping of homologs : NCBIRAB39B [Mapview hg19]  RAB39B [Mapview hg38]
OMIM300774   
Gene and transcription
Genbank (Entrez)AK056209 AL834460 AM393847 AY052478 BC009714
RefSeq transcript (Entrez)NM_171998
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB39B
Cluster EST : UnigeneHs.632832 [ NCBI ]
CGAP (NCI)Hs.632832
Alternative Splicing GalleryENSG00000155961
Gene ExpressionRAB39B [ NCBI-GEO ]   RAB39B [ EBI - ARRAY_EXPRESS ]   RAB39B [ SEEK ]   RAB39B [ MEM ]
Gene Expression Viewer (FireBrowse)RAB39B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116442
GTEX Portal (Tissue expression)RAB39B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DA2
Splice isoforms : SwissVarQ96DA2
PhosPhoSitePlusQ96DA2
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB39B
DMDM Disease mutations116442
Blocks (Seattle)RAB39B
SuperfamilyQ96DA2
Human Protein AtlasENSG00000155961
Peptide AtlasQ96DA2
HPRD06703
IPIIPI00060801   
Protein Interaction databases
DIP (DOE-UCLA)Q96DA2
IntAct (EBI)Q96DA2
FunCoupENSG00000155961
BioGRIDRAB39B
STRING (EMBL)RAB39B
ZODIACRAB39B
Ontologies - Pathways
QuickGOQ96DA2
Ontology : AmiGOGTPase activity  protein binding  GTP binding  intracellular  Golgi apparatus  plasma membrane  regulation of autophagy  protein transport  vesicle-mediated transport  myosin V binding  vesicle  neuron projection  synapse organization  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  intracellular  Golgi apparatus  plasma membrane  regulation of autophagy  protein transport  vesicle-mediated transport  myosin V binding  vesicle  neuron projection  synapse organization  
NDEx NetworkRAB39B
Atlas of Cancer Signalling NetworkRAB39B
Wikipedia pathwaysRAB39B
Orthology - Evolution
OrthoDB116442
GeneTree (enSembl)ENSG00000155961
Phylogenetic Trees/Animal Genes : TreeFamRAB39B
HOVERGENQ96DA2
HOGENOMQ96DA2
Homologs : HomoloGeneRAB39B
Homology/Alignments : Family Browser (UCSC)RAB39B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB39B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB39B
dbVarRAB39B
ClinVarRAB39B
1000_GenomesRAB39B 
Exome Variant ServerRAB39B
ExAC (Exome Aggregation Consortium)RAB39B (select the gene name)
Genetic variants : HAPMAP116442
Genomic Variants (DGV)RAB39B [DGVbeta]
DECIPHERRAB39B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB39B 
Mutations
ICGC Data PortalRAB39B 
TCGA Data PortalRAB39B 
Broad Tumor PortalRAB39B
OASIS PortalRAB39B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB39B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB39B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RAB39B
DgiDB (Drug Gene Interaction Database)RAB39B
DoCM (Curated mutations)RAB39B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB39B (select a term)
intoGenRAB39B
Cancer3DRAB39B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300774   
Orphanet2216    3256   
MedgenRAB39B
Genetic Testing Registry RAB39B
NextProtQ96DA2 [Medical]
TSGene116442
GENETestsRAB39B
Target ValidationRAB39B
Huge Navigator RAB39B [HugePedia]
snp3D : Map Gene to Disease116442
BioCentury BCIQRAB39B
ClinGenRAB39B (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116442
Chemical/Pharm GKB GenePA34131
Clinical trialRAB39B
Miscellaneous
canSAR (ICR)RAB39B (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB39B
EVEXRAB39B
GoPubMedRAB39B
iHOPRAB39B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:12:20 CEST 2017

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