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RAB3B (RAB3B, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB3B
LocusID (NCBI) 5865
Atlas_Id 41990
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52373628 and ends at 52456436 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAB3B (1p32.3) / TXNDC12 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB3B   9778
Cards
Entrez_Gene (NCBI)RAB3B  5865  RAB3B, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB3B
Ensembl hg19 (Hinxton)ENSG00000169213 [Gene_View]  chr1:52373628-52456436 [Contig_View]  RAB3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000169213 [Gene_View]  chr1:52373628-52456436 [Contig_View]  RAB3B [Vega]
ICGC DataPortalENSG00000169213
TCGA cBioPortalRAB3B
AceView (NCBI)RAB3B
Genatlas (Paris)RAB3B
WikiGenes5865
SOURCE (Princeton)RAB3B
Genetics Home Reference (NIH)RAB3B
Genomic and cartography
GoldenPath hg19 (UCSC)RAB3B  -     chr1:52373628-52456436 -  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB3B  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblRAB3B - 1p32.3 [CytoView hg19]  RAB3B - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIRAB3B [Mapview hg19]  RAB3B [Mapview hg38]
OMIM179510   
Gene and transcription
Genbank (Entrez)AF498932 AK002107 AK092167 AK291653 AU119030
RefSeq transcript (Entrez)NM_002867
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)RAB3B
Cluster EST : UnigeneHs.123072 [ NCBI ]
CGAP (NCI)Hs.123072
Alternative Splicing GalleryENSG00000169213
Gene ExpressionRAB3B [ NCBI-GEO ]   RAB3B [ EBI - ARRAY_EXPRESS ]   RAB3B [ SEEK ]   RAB3B [ MEM ]
Gene Expression Viewer (FireBrowse)RAB3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5865
GTEX Portal (Tissue expression)RAB3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20337   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20337  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20337
Splice isoforms : SwissVarP20337
PhosPhoSitePlusP20337
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
Conserved Domain (NCBI)RAB3B
DMDM Disease mutations5865
Blocks (Seattle)RAB3B
PDB (SRS)3DZ8   
PDB (PDBSum)3DZ8   
PDB (IMB)3DZ8   
PDB (RSDB)3DZ8   
Structural Biology KnowledgeBase3DZ8   
SCOP (Structural Classification of Proteins)3DZ8   
CATH (Classification of proteins structures)3DZ8   
SuperfamilyP20337
Human Protein AtlasENSG00000169213
Peptide AtlasP20337
HPRD01540
IPIIPI00300562   
Protein Interaction databases
DIP (DOE-UCLA)P20337
IntAct (EBI)P20337
FunCoupENSG00000169213
BioGRIDRAB3B
STRING (EMBL)RAB3B
ZODIACRAB3B
Ontologies - Pathways
QuickGOP20337
Ontology : AmiGOGTPase activity  protein binding  GTP binding  cytoplasm  cytosol  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  synaptic vesicle  regulation of exocytosis  peptidyl-cysteine methylation  GDP binding  antigen processing and presentation  secretory granule  myosin V binding  vesicle  perinuclear region of cytoplasm  positive regulation of dopamine uptake involved in synaptic transmission  extracellular exosome  regulation of vesicle size  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  cytoplasm  cytosol  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  synaptic vesicle  regulation of exocytosis  peptidyl-cysteine methylation  GDP binding  antigen processing and presentation  secretory granule  myosin V binding  vesicle  perinuclear region of cytoplasm  positive regulation of dopamine uptake involved in synaptic transmission  extracellular exosome  regulation of vesicle size  
Pathways : KEGGTight junction   
NDEx NetworkRAB3B
Atlas of Cancer Signalling NetworkRAB3B
Wikipedia pathwaysRAB3B
Orthology - Evolution
OrthoDB5865
GeneTree (enSembl)ENSG00000169213
Phylogenetic Trees/Animal Genes : TreeFamRAB3B
HOVERGENP20337
HOGENOMP20337
Homologs : HomoloGeneRAB3B
Homology/Alignments : Family Browser (UCSC)RAB3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB3B
dbVarRAB3B
ClinVarRAB3B
1000_GenomesRAB3B 
Exome Variant ServerRAB3B
ExAC (Exome Aggregation Consortium)RAB3B (select the gene name)
Genetic variants : HAPMAP5865
Genomic Variants (DGV)RAB3B [DGVbeta]
DECIPHER (Syndromes)1:52373628-52456436  ENSG00000169213
CONAN: Copy Number AnalysisRAB3B 
Mutations
ICGC Data PortalRAB3B 
TCGA Data PortalRAB3B 
Broad Tumor PortalRAB3B
OASIS PortalRAB3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB3B
DgiDB (Drug Gene Interaction Database)RAB3B
DoCM (Curated mutations)RAB3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB3B (select a term)
intoGenRAB3B
Cancer3DRAB3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM179510   
Orphanet
MedgenRAB3B
Genetic Testing Registry RAB3B
NextProtP20337 [Medical]
TSGene5865
GENETestsRAB3B
Huge Navigator RAB3B [HugePedia]
snp3D : Map Gene to Disease5865
BioCentury BCIQRAB3B
ClinGenRAB3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5865
Chemical/Pharm GKB GenePA34133
Clinical trialRAB3B
Miscellaneous
canSAR (ICR)RAB3B (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB3B
EVEXRAB3B
GoPubMedRAB3B
iHOPRAB3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:00 CET 2017

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