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RAB3C (RAB3C, member RAS oncogene family)

Identity

Other alias-
HGNC (Hugo) RAB3C
LocusID (NCBI) 115827
Atlas_Id 41991
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 58582188 and ends at 58859396 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLU (8p21.1) / RAB3C (5q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB3C   30269
Cards
Entrez_Gene (NCBI)RAB3C  115827  RAB3C, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB3C
Ensembl hg19 (Hinxton)ENSG00000152932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152932 [Gene_View]  chr5:58582188-58859396 [Contig_View]  RAB3C [Vega]
ICGC DataPortalENSG00000152932
TCGA cBioPortalRAB3C
AceView (NCBI)RAB3C
Genatlas (Paris)RAB3C
WikiGenes115827
SOURCE (Princeton)RAB3C
Genetics Home Reference (NIH)RAB3C
Genomic and cartography
GoldenPath hg38 (UCSC)RAB3C  -     chr5:58582188-58859396 +  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB3C  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblRAB3C - 5q11.2 [CytoView hg19]  RAB3C - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIRAB3C [Mapview hg19]  RAB3C [Mapview hg38]
OMIM612829   
Gene and transcription
Genbank (Entrez)AB073648 AB074188 AK055409 AK094685 AY026936
RefSeq transcript (Entrez)NM_001317915 NM_138453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB3C
Cluster EST : UnigeneHs.482173 [ NCBI ]
CGAP (NCI)Hs.482173
Alternative Splicing GalleryENSG00000152932
Gene ExpressionRAB3C [ NCBI-GEO ]   RAB3C [ EBI - ARRAY_EXPRESS ]   RAB3C [ SEEK ]   RAB3C [ MEM ]
Gene Expression Viewer (FireBrowse)RAB3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115827
GTEX Portal (Tissue expression)RAB3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E17
Splice isoforms : SwissVarQ96E17
PhosPhoSitePlusQ96E17
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB3C
DMDM Disease mutations115827
Blocks (Seattle)RAB3C
SuperfamilyQ96E17
Human Protein AtlasENSG00000152932
Peptide AtlasQ96E17
HPRD06704
IPIIPI00061114   
Protein Interaction databases
DIP (DOE-UCLA)Q96E17
IntAct (EBI)Q96E17
FunCoupENSG00000152932
BioGRIDRAB3C
STRING (EMBL)RAB3C
ZODIACRAB3C
Ontologies - Pathways
QuickGOQ96E17
Ontology : AmiGOGTPase activity  protein binding  GTP binding  cytosol  plasma membrane  synaptic vesicle  protein transport  regulation of exocytosis  antigen processing and presentation  GTP-dependent protein binding  myosin V binding  vesicle  perinuclear region of cytoplasm  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  cytosol  plasma membrane  synaptic vesicle  protein transport  regulation of exocytosis  antigen processing and presentation  GTP-dependent protein binding  myosin V binding  vesicle  perinuclear region of cytoplasm  
NDEx NetworkRAB3C
Atlas of Cancer Signalling NetworkRAB3C
Wikipedia pathwaysRAB3C
Orthology - Evolution
OrthoDB115827
GeneTree (enSembl)ENSG00000152932
Phylogenetic Trees/Animal Genes : TreeFamRAB3C
HOVERGENQ96E17
HOGENOMQ96E17
Homologs : HomoloGeneRAB3C
Homology/Alignments : Family Browser (UCSC)RAB3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB3C
dbVarRAB3C
ClinVarRAB3C
1000_GenomesRAB3C 
Exome Variant ServerRAB3C
ExAC (Exome Aggregation Consortium)RAB3C (select the gene name)
Genetic variants : HAPMAP115827
Genomic Variants (DGV)RAB3C [DGVbeta]
DECIPHERRAB3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB3C 
Mutations
ICGC Data PortalRAB3C 
TCGA Data PortalRAB3C 
Broad Tumor PortalRAB3C
OASIS PortalRAB3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB3C
DgiDB (Drug Gene Interaction Database)RAB3C
DoCM (Curated mutations)RAB3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB3C (select a term)
intoGenRAB3C
Cancer3DRAB3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612829   
Orphanet
MedgenRAB3C
Genetic Testing Registry RAB3C
NextProtQ96E17 [Medical]
TSGene115827
GENETestsRAB3C
Target ValidationRAB3C
Huge Navigator RAB3C [HugePedia]
snp3D : Map Gene to Disease115827
BioCentury BCIQRAB3C
ClinGenRAB3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115827
Chemical/Pharm GKB GenePA134874100
Clinical trialRAB3C
Miscellaneous
canSAR (ICR)RAB3C (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB3C
EVEXRAB3C
GoPubMedRAB3C
iHOPRAB3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:27:39 CEST 2017

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