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RAB3D (RAB3D, member RAS oncogene family)

Identity

Alias_namesGOV
Alias_symbol (synonym)RAB16
D2-2
RAD3D
Other alias
HGNC (Hugo) RAB3D
LocusID (NCBI) 9545
Atlas_Id 41992
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11322046 and ends at 11339668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAB3D (19p13.2) / TMEM205 (19p13.2)RAB3D 19p13.2 / TMEM205 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB3D   9779
Cards
Entrez_Gene (NCBI)RAB3D  9545  RAB3D, member RAS oncogene family
AliasesD2-2; GOV; RAB16; RAD3D
GeneCards (Weizmann)RAB3D
Ensembl hg19 (Hinxton)ENSG00000105514 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105514 [Gene_View]  chr19:11322046-11339668 [Contig_View]  RAB3D [Vega]
ICGC DataPortalENSG00000105514
TCGA cBioPortalRAB3D
AceView (NCBI)RAB3D
Genatlas (Paris)RAB3D
WikiGenes9545
SOURCE (Princeton)RAB3D
Genetics Home Reference (NIH)RAB3D
Genomic and cartography
GoldenPath hg38 (UCSC)RAB3D  -     chr19:11322046-11339668 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB3D  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblRAB3D - 19p13.2 [CytoView hg19]  RAB3D - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIRAB3D [Mapview hg19]  RAB3D [Mapview hg38]
OMIM604350   
Gene and transcription
Genbank (Entrez)AF019226 AF081353 AF498933 AK313538 BC007960
RefSeq transcript (Entrez)NM_004283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB3D
Cluster EST : UnigeneHs.744916 [ NCBI ]
CGAP (NCI)Hs.744916
Alternative Splicing GalleryENSG00000105514
Gene ExpressionRAB3D [ NCBI-GEO ]   RAB3D [ EBI - ARRAY_EXPRESS ]   RAB3D [ SEEK ]   RAB3D [ MEM ]
Gene Expression Viewer (FireBrowse)RAB3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9545
GTEX Portal (Tissue expression)RAB3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95716   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95716  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95716
Splice isoforms : SwissVarO95716
PhosPhoSitePlusO95716
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB3D
DMDM Disease mutations9545
Blocks (Seattle)RAB3D
PDB (SRS)2GF9   
PDB (PDBSum)2GF9   
PDB (IMB)2GF9   
PDB (RSDB)2GF9   
Structural Biology KnowledgeBase2GF9   
SCOP (Structural Classification of Proteins)2GF9   
CATH (Classification of proteins structures)2GF9   
SuperfamilyO95716
Human Protein AtlasENSG00000105514
Peptide AtlasO95716
HPRD05070
IPIIPI00032808   
Protein Interaction databases
DIP (DOE-UCLA)O95716
IntAct (EBI)O95716
FunCoupENSG00000105514
BioGRIDRAB3D
STRING (EMBL)RAB3D
ZODIACRAB3D
Ontologies - Pathways
QuickGOO95716
Ontology : AmiGOGTPase activity  GTP binding  mitochondrion  cytoplasmic microtubule  plasma membrane  protein transport  peptidyl-cysteine methylation  transport vesicle  GTP-dependent protein binding  myosin V binding  azurophil granule membrane  zymogen granule  neutrophil degranulation  bone resorption  extracellular exosome  secretory vesicle  positive regulation of regulated secretory pathway  
Ontology : EGO-EBIGTPase activity  GTP binding  mitochondrion  cytoplasmic microtubule  plasma membrane  protein transport  peptidyl-cysteine methylation  transport vesicle  GTP-dependent protein binding  myosin V binding  azurophil granule membrane  zymogen granule  neutrophil degranulation  bone resorption  extracellular exosome  secretory vesicle  positive regulation of regulated secretory pathway  
Pathways : KEGGPancreatic secretion   
NDEx NetworkRAB3D
Atlas of Cancer Signalling NetworkRAB3D
Wikipedia pathwaysRAB3D
Orthology - Evolution
OrthoDB9545
GeneTree (enSembl)ENSG00000105514
Phylogenetic Trees/Animal Genes : TreeFamRAB3D
HOVERGENO95716
HOGENOMO95716
Homologs : HomoloGeneRAB3D
Homology/Alignments : Family Browser (UCSC)RAB3D
Gene fusions - Rearrangements
Fusion : MitelmanRAB3D/TMEM205 [19p13.2/19p13.2]  
Fusion: TCGARAB3D 19p13.2 TMEM205 19p13.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB3D
dbVarRAB3D
ClinVarRAB3D
1000_GenomesRAB3D 
Exome Variant ServerRAB3D
ExAC (Exome Aggregation Consortium)RAB3D (select the gene name)
Genetic variants : HAPMAP9545
Genomic Variants (DGV)RAB3D [DGVbeta]
DECIPHERRAB3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB3D 
Mutations
ICGC Data PortalRAB3D 
TCGA Data PortalRAB3D 
Broad Tumor PortalRAB3D
OASIS PortalRAB3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RAB3D
DgiDB (Drug Gene Interaction Database)RAB3D
DoCM (Curated mutations)RAB3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB3D (select a term)
intoGenRAB3D
Cancer3DRAB3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604350   
Orphanet
MedgenRAB3D
Genetic Testing Registry RAB3D
NextProtO95716 [Medical]
TSGene9545
GENETestsRAB3D
Target ValidationRAB3D
Huge Navigator RAB3D [HugePedia]
snp3D : Map Gene to Disease9545
BioCentury BCIQRAB3D
ClinGenRAB3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9545
Chemical/Pharm GKB GenePA34134
Clinical trialRAB3D
Miscellaneous
canSAR (ICR)RAB3D (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB3D
EVEXRAB3D
GoPubMedRAB3D
iHOPRAB3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:52:11 CEST 2017

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