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RAB3IL1 (RAB3A interacting protein like 1)

Identity

Alias_namesRAB3A interacting protein (rabin3)-like 1
Alias_symbol (synonym)GRAB
Other alias
HGNC (Hugo) RAB3IL1
LocusID (NCBI) 5866
Atlas_Id 41993
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 61897296 and ends at 61920269 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAB3IL1 (11q12.2) / NRG1 (8p12)RAB3IL1 11q12.2 / NRG1 8p12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB3IL1   9780
Cards
Entrez_Gene (NCBI)RAB3IL1  5866  RAB3A interacting protein like 1
AliasesGRAB
GeneCards (Weizmann)RAB3IL1
Ensembl hg19 (Hinxton)ENSG00000167994 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167994 [Gene_View]  chr11:61897296-61920269 [Contig_View]  RAB3IL1 [Vega]
ICGC DataPortalENSG00000167994
TCGA cBioPortalRAB3IL1
AceView (NCBI)RAB3IL1
Genatlas (Paris)RAB3IL1
WikiGenes5866
SOURCE (Princeton)RAB3IL1
Genetics Home Reference (NIH)RAB3IL1
Genomic and cartography
GoldenPath hg38 (UCSC)RAB3IL1  -     chr11:61897296-61920269 -  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB3IL1  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblRAB3IL1 - 11q12.2 [CytoView hg19]  RAB3IL1 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIRAB3IL1 [Mapview hg19]  RAB3IL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA865861 AF084557 BC022239 BC051820 BQ946081
RefSeq transcript (Entrez)NM_001271686 NM_013401
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB3IL1
Cluster EST : UnigeneHs.13759 [ NCBI ]
CGAP (NCI)Hs.13759
Alternative Splicing GalleryENSG00000167994
Gene ExpressionRAB3IL1 [ NCBI-GEO ]   RAB3IL1 [ EBI - ARRAY_EXPRESS ]   RAB3IL1 [ SEEK ]   RAB3IL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB3IL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5866
GTEX Portal (Tissue expression)RAB3IL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBN0
Splice isoforms : SwissVarQ8TBN0
PhosPhoSitePlusQ8TBN0
Domains : Interpro (EBI)Sec2_N   
Domain families : Pfam (Sanger)Sec2p (PF06428)   
Domain families : Pfam (NCBI)pfam06428   
Conserved Domain (NCBI)RAB3IL1
DMDM Disease mutations5866
Blocks (Seattle)RAB3IL1
PDB (SRS)4LI0   
PDB (PDBSum)4LI0   
PDB (IMB)4LI0   
PDB (RSDB)4LI0   
Structural Biology KnowledgeBase4LI0   
SCOP (Structural Classification of Proteins)4LI0   
CATH (Classification of proteins structures)4LI0   
SuperfamilyQ8TBN0
Human Protein AtlasENSG00000167994
Peptide AtlasQ8TBN0
HPRD10181
IPIIPI00328884   IPI00384251   IPI00982623   IPI00978123   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBN0
IntAct (EBI)Q8TBN0
FunCoupENSG00000167994
BioGRIDRAB3IL1
STRING (EMBL)RAB3IL1
ZODIACRAB3IL1
Ontologies - Pathways
QuickGOQ8TBN0
Ontology : AmiGOprotein binding  cytosol  protein transport  Rab guanyl-nucleotide exchange factor activity  Rab guanyl-nucleotide exchange factor activity  positive regulation of GTPase activity  membrane organization  
Ontology : EGO-EBIprotein binding  cytosol  protein transport  Rab guanyl-nucleotide exchange factor activity  Rab guanyl-nucleotide exchange factor activity  positive regulation of GTPase activity  membrane organization  
NDEx NetworkRAB3IL1
Atlas of Cancer Signalling NetworkRAB3IL1
Wikipedia pathwaysRAB3IL1
Orthology - Evolution
OrthoDB5866
GeneTree (enSembl)ENSG00000167994
Phylogenetic Trees/Animal Genes : TreeFamRAB3IL1
HOVERGENQ8TBN0
HOGENOMQ8TBN0
Homologs : HomoloGeneRAB3IL1
Homology/Alignments : Family Browser (UCSC)RAB3IL1
Gene fusions - Rearrangements
Fusion : MitelmanRAB3IL1/NRG1 [11q12.2/8p12]  
Fusion: TCGARAB3IL1 11q12.2 NRG1 8p12 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB3IL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB3IL1
dbVarRAB3IL1
ClinVarRAB3IL1
1000_GenomesRAB3IL1 
Exome Variant ServerRAB3IL1
ExAC (Exome Aggregation Consortium)RAB3IL1 (select the gene name)
Genetic variants : HAPMAP5866
Genomic Variants (DGV)RAB3IL1 [DGVbeta]
DECIPHERRAB3IL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB3IL1 
Mutations
ICGC Data PortalRAB3IL1 
TCGA Data PortalRAB3IL1 
Broad Tumor PortalRAB3IL1
OASIS PortalRAB3IL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB3IL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB3IL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB3IL1
DgiDB (Drug Gene Interaction Database)RAB3IL1
DoCM (Curated mutations)RAB3IL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB3IL1 (select a term)
intoGenRAB3IL1
Cancer3DRAB3IL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB3IL1
Genetic Testing Registry RAB3IL1
NextProtQ8TBN0 [Medical]
TSGene5866
GENETestsRAB3IL1
Target ValidationRAB3IL1
Huge Navigator RAB3IL1 [HugePedia]
snp3D : Map Gene to Disease5866
BioCentury BCIQRAB3IL1
ClinGenRAB3IL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5866
Chemical/Pharm GKB GenePA34135
Clinical trialRAB3IL1
Miscellaneous
canSAR (ICR)RAB3IL1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB3IL1
EVEXRAB3IL1
GoPubMedRAB3IL1
iHOPRAB3IL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:52:11 CEST 2017

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