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RAB40A (RAB40A, member RAS oncogene family)

Identity

Other namesRAR2
RAR2A
HGNC (Hugo) RAB40A
LocusID (NCBI) 142684
Location Xq22.2
Location_base_pair Starts at 102754681 and ends at 102774417 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB40A   18283
Cards
Entrez_Gene (NCBI)RAB40A  142684  RAB40A, member RAS oncogene family
GeneCards (Weizmann)RAB40A
Ensembl (Hinxton)ENSG00000172476 [Gene_View]  chrX:102754681-102774417 [Contig_View]  RAB40A [Vega]
ICGC DataPortalENSG00000172476
AceView (NCBI)RAB40A
Genatlas (Paris)RAB40A
WikiGenes142684
SOURCE (Princeton)NM_080879
Genomic and cartography
GoldenPath (UCSC)RAB40A  -  Xq22.2   chrX:102754681-102774417 -  Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblRAB40A - Xq22.2 [CytoView]
Mapping of homologs : NCBIRAB40A [Mapview]
Gene and transcription
Genbank (Entrez)AB232637 AF132748 AF422143 AK056859 BC074854
RefSeq transcript (Entrez)NM_080879
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_017149 NT_011651 NW_001842389 NW_004929444
Consensus coding sequences : CCDS (NCBI)RAB40A
Cluster EST : UnigeneHs.706904 [ NCBI ]
CGAP (NCI)Hs.706904
Alternative Splicing : Fast-db (Paris)GSHG0032245
Alternative Splicing GalleryENSG00000172476
Gene ExpressionRAB40A [ NCBI-GEO ]     RAB40A [ SEEK ]   RAB40A [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXH6 (Uniprot)
NextProtQ8WXH6  [Medical]
With graphics : InterProQ8WXH6
Splice isoforms : SwissVarQ8WXH6 (Swissvar)
Domaine pattern : Prosite (Expaxy)RAB (PS51419)    SOCS (PS50225)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type    SOCS_C   
Related proteins : CluSTrQ8WXH6
Domain families : Pfam (Sanger)Ras (PF00071)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00071    pfam07525   
Domain families : Smart (EMBL)RAB (SM00175)  SOCS (SM00253)  SOCS_box (SM00969)  
DMDM Disease mutations142684
Blocks (Seattle)Q8WXH6
Human Protein AtlasENSG00000172476
Peptide AtlasQ8WXH6
HPRD06705
IPIIPI00514509   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXH6
IntAct (EBI)Q8WXH6
FunCoupENSG00000172476
BioGRIDRAB40A
InParanoidQ8WXH6
Interologous Interaction database Q8WXH6
IntegromeDBRAB40A
STRING (EMBL)RAB40A
Ontologies - Pathways
Ontology : AmiGOGTP binding  plasma membrane  small GTPase mediated signal transduction  protein transport  protein ubiquitination  
Ontology : EGO-EBIGTP binding  plasma membrane  small GTPase mediated signal transduction  protein transport  protein ubiquitination  
Protein Interaction DatabaseRAB40A
Wikipedia pathwaysRAB40A
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RAB40A
SNP (GeneSNP Utah)RAB40A
SNP : HGBaseRAB40A
Genetic variants : HAPMAPRAB40A
1000_GenomesRAB40A 
ICGC programENSG00000172476 
CONAN: Copy Number AnalysisRAB40A 
Somatic Mutations in Cancer : COSMICRAB40A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Mutations and Diseases : HGMDRAB40A
OMIM
MedgenRAB40A
GENETestsRAB40A
Disease Genetic AssociationRAB40A
Huge Navigator RAB40A [HugePedia]  RAB40A [HugeCancerGEM]
Genomic VariantsRAB40A  RAB40A [DGVbeta]
Exome VariantRAB40A
dbVarRAB40A
ClinVarRAB40A
snp3D : Map Gene to Disease142684
General knowledge
Homologs : HomoloGeneRAB40A
Homology/Alignments : Family Browser (UCSC)RAB40A
Phylogenetic Trees/Animal Genes : TreeFamRAB40A
Chemical/Protein Interactions : CTD142684
Chemical/Pharm GKB GenePA34137
Clinical trialRAB40A
Cancer Resource (Charite)ENSG00000172476
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
CoreMineRAB40A
iHOPRAB40A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:11:53 CEST 2014

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