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RAB40A (RAB40A, member RAS oncogene family)

Identity

Other namesRAR2
RAR2A
HGNC (Hugo) RAB40A
LocusID (NCBI) 142684
Location Xq22.2
Location_base_pair Starts at 102754681 and ends at 102774417 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB40A   18283
Entrez_Gene (NCBI)RAB40A  142684  RAB40A, member RAS oncogene family
Cards
GeneCards (Weizmann)RAB40A
Ensembl (Hinxton)ENSG00000172476 [Gene_View]  chrX:102754681-102774417 [Contig_View]  RAB40A [Vega]
AceView (NCBI)RAB40A
Genatlas (Paris)RAB40A
SOURCE (Stanford)NM_080879
Genomic and cartography
GoldenPath (UCSC)RAB40A  -  Xq22.2   chrX:102754681-102774417 -  Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblRAB40A - Xq22.2 [CytoView]
Mapping of homologs : NCBIRAB40A [Mapview]
Gene and transcription
Genbank (Entrez)AB232637 AF132748 AF422143 AK056859 BC074854
RefSeq transcript (SRS)NM_080879
RefSeq transcript (Entrez)NM_080879
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_017149 NT_011651 NW_001842389 NW_004078123
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_017149 NT_011651 NW_001842389 NW_004078123
Consensus coding sequences : CCDS (NCBI)RAB40A
Cluster EST : UnigeneHs.706904 [ SRS ] Hs.706904 [ NCBI ]
CGAP (NCI)Hs.706904
Alternative Splicing : Fast-db (Paris)GSHG0032245
Alternative Splicing GalleryENSG00000172476
Gene ExpressionRAB40A [ NCBI-GEO ]   RAB40A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXH6 (SRS) Q8WXH6 (Uniprot)
NextProtQ8WXH6
With graphics : InterProQ8WXH6
Splice isoforms : SwissVarQ8WXH6(Swissvar)
Domaine pattern : Prosite (SRS)RAB (PS51419)    SOCS (PS50225)   
Domaine pattern : Prosite (Expaxy)RAB (PS51419)    SOCS (PS50225)   
Domains : Interpro (SRS)Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type    SOCS_C   
Domains : Interpro (EBI)Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type    SOCS_C   
Related proteins : CluSTrQ8WXH6
Domain families : Pfam (SRS)Ras (PF00071)    SOCS_box (PF07525)   
Domain families : Pfam (Sanger)Ras (PF00071)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00071    pfam07525   
Domain families : Smart (EMBL)RAB (SM00175)  SOCS (SM00253)  SOCS_box (SM00969)  
DMDM142684
Blocks (Seattle)Q8WXH6
Human Protein AtlasENSG00000172476
HPRD06705
IPIIPI00514509   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXH6
IntAct (EBI)Q8WXH6
FunCoupENSG00000172476
REACTOMERAB40A
Protein Interaction Database142684
BioGRIDRAB40A
InParanoidQ8WXH6
Interologous Interaction database Q8WXH6
IntegromeDBRAB40A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RAB40A
SNP (GeneSNP Utah)RAB40A
SNP : HGBaseRAB40A
Genetic variants : HAPMAPRAB40A
Somatic Mutations in Cancer : COSMICRAB40A 
CONAN: Copy Number AnalysisRAB40A 
Mutations and Diseases : HGMDRAB40A
OMIM
GENETests
Disease Genetic AssociationRAB40A
Huge Navigator RAB40A [HugePedia]  RAB40A [HugeCancerGEM]
Genomic VariantsRAB40A  RAB40A [DGVbeta]
snp3D : Map Gene to Disease142684
General knowledge
Homologs : HomoloGeneRAB40A
Homology/Alignments : Family Browser (UCSC)RAB40A
Phylogenetic Trees/Animal Genes : TreeFamRAB40A
Chemical/Protein Interactions : CTD142684
Chemical/Pharm GKB GenePA34137
Clinical trialRAB40A
Cancer Resource (Charite)ENSG00000172476
Ontology : AmiGOGTP binding  intracellular  plasma membrane  small GTPase mediated signal transduction  protein transport  protein ubiquitination  
Ontology : EGO-EBIGTP binding  intracellular  plasma membrane  small GTPase mediated signal transduction  protein transport  protein ubiquitination  
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
PubGeneRAB40A
iHOPRAB40A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:26:25 CEST 2013
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