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RAB40A (RAB40A, member RAS oncogene family)

Identity

Alias (NCBI)RAR2
RAR2A
HGNC (Hugo) RAB40A
HGNC Alias symbRAR2A
Rar-2
LocusID (NCBI) 142684
Atlas_Id 41994
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103499131 and ends at 103519489 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RAB40A   18283
Cards
Entrez_Gene (NCBI)RAB40A    RAB40A, member RAS oncogene family
AliasesRAR2; RAR2A
GeneCards (Weizmann)RAB40A
Ensembl hg19 (Hinxton)ENSG00000172476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172476 [Gene_View]  ENSG00000172476 [Sequence]  chrX:103499131-103519489 [Contig_View]  RAB40A [Vega]
ICGC DataPortalENSG00000172476
TCGA cBioPortalRAB40A
AceView (NCBI)RAB40A
Genatlas (Paris)RAB40A
SOURCE (Princeton)RAB40A
Genetics Home Reference (NIH)RAB40A
Genomic and cartography
GoldenPath hg38 (UCSC)RAB40A  -     chrX:103499131-103519489 -  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB40A  -     Xq22.2   [Description]    (hg19-Feb_2009)
GoldenPathRAB40A - Xq22.2 [CytoView hg19]  RAB40A - Xq22.2 [CytoView hg38]
ImmunoBaseENSG00000172476
Genome Data Viewer NCBIRAB40A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB232637 AF132748 AF422143 AK056859 BC074854
RefSeq transcript (Entrez)NM_080879
Consensus coding sequences : CCDS (NCBI)RAB40A
Gene ExpressionRAB40A [ NCBI-GEO ]   RAB40A [ EBI - ARRAY_EXPRESS ]   RAB40A [ SEEK ]   RAB40A [ MEM ]
Gene Expression Viewer (FireBrowse)RAB40A [ Firebrowse - Broad ]
GenevisibleExpression of RAB40A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142684
GTEX Portal (Tissue expression)RAB40A
Human Protein AtlasENSG00000172476-RAB40A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXH6
PhosPhoSitePlusQ8WXH6
Domaine pattern : Prosite (Expaxy)RAB (PS51419)    SOCS (PS50225)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    SOCS_box    SOCS_box-like_dom_sf   
Domain families : Pfam (Sanger)Ras (PF00071)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00071    pfam07525   
Domain families : Smart (EMBL)SOCS (SM00253)  SOCS_box (SM00969)  
Conserved Domain (NCBI)RAB40A
SuperfamilyQ8WXH6
AlphaFold pdb e-kbQ8WXH6   
Human Protein Atlas [tissue]ENSG00000172476-RAB40A [tissue]
HPRD06705
Protein Interaction databases
DIP (DOE-UCLA)Q8WXH6
IntAct (EBI)Q8WXH6
BioGRIDRAB40A
STRING (EMBL)RAB40A
ZODIACRAB40A
Ontologies - Pathways
QuickGOQ8WXH6
Ontology : AmiGOGTPase activity  GTP binding  endosome  plasma membrane  synaptic vesicle  protein ubiquitination  intracellular signal transduction  protein localization to plasma membrane  
Ontology : EGO-EBIGTPase activity  GTP binding  endosome  plasma membrane  synaptic vesicle  protein ubiquitination  intracellular signal transduction  protein localization to plasma membrane  
NDEx NetworkRAB40A
Atlas of Cancer Signalling NetworkRAB40A
Wikipedia pathwaysRAB40A
Orthology - Evolution
OrthoDB142684
GeneTree (enSembl)ENSG00000172476
Phylogenetic Trees/Animal Genes : TreeFamRAB40A
Homologs : HomoloGeneRAB40A
Homology/Alignments : Family Browser (UCSC)RAB40A
Gene fusions - Rearrangements
Fusion : QuiverRAB40A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB40A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB40A
dbVarRAB40A
ClinVarRAB40A
MonarchRAB40A
1000_GenomesRAB40A 
Exome Variant ServerRAB40A
GNOMAD BrowserENSG00000172476
Varsome BrowserRAB40A
ACMGRAB40A variants
VarityQ8WXH6
Genomic Variants (DGV)RAB40A [DGVbeta]
DECIPHERRAB40A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB40A 
Mutations
ICGC Data PortalRAB40A 
TCGA Data PortalRAB40A 
Broad Tumor PortalRAB40A
OASIS PortalRAB40A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB40A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB40A
Mutations and Diseases : HGMDRAB40A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRAB40A
DgiDB (Drug Gene Interaction Database)RAB40A
DoCM (Curated mutations)RAB40A
CIViC (Clinical Interpretations of Variants in Cancer)RAB40A
Cancer3DRAB40A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRAB40A
MedgenRAB40A
Genetic Testing Registry RAB40A
NextProtQ8WXH6 [Medical]
GENETestsRAB40A
Target ValidationRAB40A
Huge Navigator RAB40A [HugePedia]
ClinGenRAB40A
Clinical trials, drugs, therapy
MyCancerGenomeRAB40A
Protein Interactions : CTDRAB40A
Pharm GKB GenePA34137
PharosQ8WXH6
Clinical trialRAB40A
Miscellaneous
canSAR (ICR)RAB40A
HarmonizomeRAB40A
DataMed IndexRAB40A
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRAB40A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:54 CEST 2021

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