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RAB40A (RAB40A, member RAS oncogene family)

Identity

Other namesRAR2
RAR2A
HGNC (Hugo) RAB40A
LocusID (NCBI) 142684
Atlas_Id 41994
Location Xq22.2
Location_base_pair Starts at 102754681 and ends at 102774417 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB40A   18283
Cards
Entrez_Gene (NCBI)RAB40A  142684  RAB40A, member RAS oncogene family
GeneCards (Weizmann)RAB40A
Ensembl hg19 (Hinxton)ENSG00000172476 [Gene_View]  chrX:102754681-102774417 [Contig_View]  RAB40A [Vega]
Ensembl hg38 (Hinxton)ENSG00000172476 [Gene_View]  chrX:102754681-102774417 [Contig_View]  RAB40A [Vega]
ICGC DataPortalENSG00000172476
TCGA cBioPortalRAB40A
AceView (NCBI)RAB40A
Genatlas (Paris)RAB40A
WikiGenes142684
SOURCE (Princeton)RAB40A
Genomic and cartography
GoldenPath hg19 (UCSC)RAB40A  -     chrX:102754681-102774417 -  Xq22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB40A  -     Xq22.2   [Description]    (hg38-Dec_2013)
EnsemblRAB40A - Xq22.2 [CytoView hg19]  RAB40A - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBIRAB40A [Mapview hg19]  RAB40A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB232637 AF132748 AF422143 AK056859 BC074854
RefSeq transcript (Entrez)NM_080879
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_017149 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)RAB40A
Cluster EST : UnigeneHs.706904 [ NCBI ]
CGAP (NCI)Hs.706904
Alternative Splicing : Fast-db (Paris)GSHG0032245
Alternative Splicing GalleryENSG00000172476
Gene ExpressionRAB40A [ NCBI-GEO ]   RAB40A [ EBI - ARRAY_EXPRESS ]   RAB40A [ SEEK ]   RAB40A [ MEM ]
Gene Expression Viewer (FireBrowse)RAB40A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)142684
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXH6 (Uniprot)
NextProtQ8WXH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXH6
Splice isoforms : SwissVarQ8WXH6 (Swissvar)
PhosPhoSitePlusQ8WXH6
Domaine pattern : Prosite (Expaxy)RAB (PS51419)    SOCS (PS50225)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type    SOCS_box   
Domain families : Pfam (Sanger)Ras (PF00071)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00071    pfam07525   
Domain families : Smart (EMBL)RAB (SM00175)  SOCS (SM00253)  SOCS_box (SM00969)  
DMDM Disease mutations142684
Blocks (Seattle)RAB40A
SuperfamilyQ8WXH6
Human Protein AtlasENSG00000172476
Peptide AtlasQ8WXH6
HPRD06705
IPIIPI00514509   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXH6
IntAct (EBI)Q8WXH6
FunCoupENSG00000172476
BioGRIDRAB40A
STRING (EMBL)RAB40A
ZODIACRAB40A
Ontologies - Pathways
QuickGOQ8WXH6
Ontology : AmiGOGTPase activity  GTP binding  intracellular  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  protein ubiquitination  
Ontology : EGO-EBIGTPase activity  GTP binding  intracellular  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  protein ubiquitination  
NDEx Network
Atlas of Cancer Signalling NetworkRAB40A
Wikipedia pathwaysRAB40A
Orthology - Evolution
OrthoDB142684
GeneTree (enSembl)ENSG00000172476
Phylogenetic Trees/Animal Genes : TreeFamRAB40A
Homologs : HomoloGeneRAB40A
Homology/Alignments : Family Browser (UCSC)RAB40A
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRAB40A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB40A
dbVarRAB40A
ClinVarRAB40A
1000_GenomesRAB40A 
Exome Variant ServerRAB40A
ExAC (Exome Aggregation Consortium)RAB40A (select the gene name)
SNP (GeneSNP Utah)RAB40A
SNP : HGBaseRAB40A
Genetic variants : HAPMAPRAB40A
Genomic Variants (DGV)RAB40A [DGVbeta]
Mutations
ICGC Data PortalRAB40A 
TCGA Data PortalRAB40A 
Broad Tumor PortalRAB40A
OASIS PortalRAB40A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB40A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RAB40A
DgiDB (Drug Gene Interaction Database)RAB40A
DoCM (Curated mutations)RAB40A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB40A (select a term)
intoGenRAB40A
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:102754681-102774417
CONAN: Copy Number AnalysisRAB40A 
Mutations and Diseases : HGMDRAB40A
OMIM
MedgenRAB40A
Genetic Testing Registry RAB40A
NextProtQ8WXH6 [Medical]
TSGene142684
GENETestsRAB40A
Huge Navigator RAB40A [HugePedia]  RAB40A [HugeCancerGEM]
snp3D : Map Gene to Disease142684
BioCentury BCIQRAB40A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD142684
Chemical/Pharm GKB GenePA34137
Clinical trialRAB40A
Miscellaneous
canSAR (ICR)RAB40A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB40A
GoPubMedRAB40A
iHOPRAB40A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 18:01:14 CEST 2016

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