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RAB40AL (RAB40A like)

Identity

Alias (NCBI)MRXSMP
RAR2
RLGP
HGNC (Hugo) RAB40AL
HGNC Alias symbRAR2
RLGP
HGNC Alias nameRas like GTPase
HGNC Previous nameRAB40A, member RAS oncogene family-like
LocusID (NCBI) 282808
Atlas_Id 43039
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102937272 and ends at 102938300 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RAB40AL   25410
Cards
Entrez_Gene (NCBI)RAB40AL    RAB40A like
AliasesMRXSMP; RAR2; RLGP
GeneCards (Weizmann)RAB40AL
Ensembl hg19 (Hinxton)ENSG00000102128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102128 [Gene_View]  ENSG00000102128 [Sequence]  chrX:102937272-102938300 [Contig_View]  RAB40AL [Vega]
ICGC DataPortalENSG00000102128
TCGA cBioPortalRAB40AL
AceView (NCBI)RAB40AL
Genatlas (Paris)RAB40AL
SOURCE (Princeton)RAB40AL
Genetics Home Reference (NIH)RAB40AL
Genomic and cartography
GoldenPath hg38 (UCSC)RAB40AL  -     chrX:102937272-102938300 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB40AL  -     Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPathRAB40AL - Xq22.1 [CytoView hg19]  RAB40AL - Xq22.1 [CytoView hg38]
ImmunoBaseENSG00000102128
Genome Data Viewer NCBIRAB40AL [Mapview hg19]  
OMIM300405   
Gene and transcription
Genbank (Entrez)BC101169 BC101170 BC101171 BC101172
RefSeq transcript (Entrez)NM_001031834
Consensus coding sequences : CCDS (NCBI)RAB40AL
Gene ExpressionRAB40AL [ NCBI-GEO ]   RAB40AL [ EBI - ARRAY_EXPRESS ]   RAB40AL [ SEEK ]   RAB40AL [ MEM ]
Gene Expression Viewer (FireBrowse)RAB40AL [ Firebrowse - Broad ]
GenevisibleExpression of RAB40AL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)282808
GTEX Portal (Tissue expression)RAB40AL
Human Protein AtlasENSG00000102128-RAB40AL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C0E4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C0E4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C0E4
PhosPhoSitePlusP0C0E4
Domaine pattern : Prosite (Expaxy)RAB (PS51419)    SOCS (PS50225)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    SOCS_box    SOCS_box-like_dom_sf   
Domain families : Pfam (Sanger)Ras (PF00071)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00071    pfam07525   
Domain families : Smart (EMBL)SOCS (SM00253)  SOCS_box (SM00969)  
Conserved Domain (NCBI)RAB40AL
SuperfamilyP0C0E4
AlphaFold pdb e-kbP0C0E4   
Human Protein Atlas [tissue]ENSG00000102128-RAB40AL [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0C0E4
IntAct (EBI)P0C0E4
BioGRIDRAB40AL
STRING (EMBL)RAB40AL
ZODIACRAB40AL
Ontologies - Pathways
QuickGOP0C0E4
Ontology : AmiGOGTPase activity  GTP binding  cytoplasm  mitochondrion  endosome  plasma membrane  synaptic vesicle  protein ubiquitination  intracellular signal transduction  protein localization to plasma membrane  
Ontology : EGO-EBIGTPase activity  GTP binding  cytoplasm  mitochondrion  endosome  plasma membrane  synaptic vesicle  protein ubiquitination  intracellular signal transduction  protein localization to plasma membrane  
NDEx NetworkRAB40AL
Atlas of Cancer Signalling NetworkRAB40AL
Wikipedia pathwaysRAB40AL
Orthology - Evolution
OrthoDB282808
GeneTree (enSembl)ENSG00000102128
Phylogenetic Trees/Animal Genes : TreeFamRAB40AL
Homologs : HomoloGeneRAB40AL
Homology/Alignments : Family Browser (UCSC)RAB40AL
Gene fusions - Rearrangements
Fusion : QuiverRAB40AL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB40AL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB40AL
dbVarRAB40AL
ClinVarRAB40AL
MonarchRAB40AL
1000_GenomesRAB40AL 
Exome Variant ServerRAB40AL
GNOMAD BrowserENSG00000102128
Varsome BrowserRAB40AL
ACMGRAB40AL variants
VarityP0C0E4
Genomic Variants (DGV)RAB40AL [DGVbeta]
DECIPHERRAB40AL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB40AL 
Mutations
ICGC Data PortalRAB40AL 
TCGA Data PortalRAB40AL 
Broad Tumor PortalRAB40AL
OASIS PortalRAB40AL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB40AL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB40AL
Mutations and Diseases : HGMDRAB40AL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRAB40AL
DgiDB (Drug Gene Interaction Database)RAB40AL
DoCM (Curated mutations)RAB40AL
CIViC (Clinical Interpretations of Variants in Cancer)RAB40AL
Cancer3DRAB40AL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300405   
Orphanet
DisGeNETRAB40AL
MedgenRAB40AL
Genetic Testing Registry RAB40AL
NextProtP0C0E4 [Medical]
GENETestsRAB40AL
Target ValidationRAB40AL
Huge Navigator RAB40AL [HugePedia]
ClinGenRAB40AL
Clinical trials, drugs, therapy
MyCancerGenomeRAB40AL
Protein Interactions : CTDRAB40AL
Pharm GKB GenePA142671103
PharosP0C0E4
Clinical trialRAB40AL
Miscellaneous
canSAR (ICR)RAB40AL
HarmonizomeRAB40AL
DataMed IndexRAB40AL
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRAB40AL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:54 CEST 2021

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