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RAB40AL (RAB40A, member RAS oncogene family-like)

Identity

Alias_symbol (synonym)RAR2
RLGP
Other aliasMRXSMP
HGNC (Hugo) RAB40AL
LocusID (NCBI) 282808
Atlas_Id 43039
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102937272 and ends at 102938300 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB40AL   25410
Cards
Entrez_Gene (NCBI)RAB40AL  282808  RAB40A, member RAS oncogene family-like
AliasesMRXSMP; RAR2; RLGP
GeneCards (Weizmann)RAB40AL
Ensembl hg19 (Hinxton)ENSG00000102128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102128 [Gene_View]  chrX:102937272-102938300 [Contig_View]  RAB40AL [Vega]
ICGC DataPortalENSG00000102128
TCGA cBioPortalRAB40AL
AceView (NCBI)RAB40AL
Genatlas (Paris)RAB40AL
WikiGenes282808
SOURCE (Princeton)RAB40AL
Genetics Home Reference (NIH)RAB40AL
Genomic and cartography
GoldenPath hg38 (UCSC)RAB40AL  -     chrX:102937272-102938300 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB40AL  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblRAB40AL - Xq22.1 [CytoView hg19]  RAB40AL - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIRAB40AL [Mapview hg19]  RAB40AL [Mapview hg38]
OMIM300405   
Gene and transcription
Genbank (Entrez)BC101169 BC101170 BC101171 BC101172
RefSeq transcript (Entrez)NM_001031834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB40AL
Cluster EST : UnigeneHs.449517 [ NCBI ]
CGAP (NCI)Hs.449517
Alternative Splicing GalleryENSG00000102128
Gene ExpressionRAB40AL [ NCBI-GEO ]   RAB40AL [ EBI - ARRAY_EXPRESS ]   RAB40AL [ SEEK ]   RAB40AL [ MEM ]
Gene Expression Viewer (FireBrowse)RAB40AL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)282808
GTEX Portal (Tissue expression)RAB40AL
Human Protein AtlasENSG00000102128-RAB40AL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C0E4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C0E4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C0E4
Splice isoforms : SwissVarP0C0E4
PhosPhoSitePlusP0C0E4
Domaine pattern : Prosite (Expaxy)RAB (PS51419)    SOCS (PS50225)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    SOCS_box   
Domain families : Pfam (Sanger)Ras (PF00071)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00071    pfam07525   
Domain families : Smart (EMBL)SOCS (SM00253)  SOCS_box (SM00969)  
Conserved Domain (NCBI)RAB40AL
DMDM Disease mutations282808
Blocks (Seattle)RAB40AL
SuperfamilyP0C0E4
Human Protein Atlas [tissue]ENSG00000102128-RAB40AL [tissue]
Peptide AtlasP0C0E4
IPIIPI00555763   
Protein Interaction databases
DIP (DOE-UCLA)P0C0E4
IntAct (EBI)P0C0E4
FunCoupENSG00000102128
BioGRIDRAB40AL
STRING (EMBL)RAB40AL
ZODIACRAB40AL
Ontologies - Pathways
QuickGOP0C0E4
Ontology : AmiGOGTPase activity  GTP binding  cytoplasm  mitochondrion  endosome  plasma membrane  vesicle docking involved in exocytosis  synaptic vesicle  protein secretion  protein ubiquitination  intracellular signal transduction  protein localization to plasma membrane  
Ontology : EGO-EBIGTPase activity  GTP binding  cytoplasm  mitochondrion  endosome  plasma membrane  vesicle docking involved in exocytosis  synaptic vesicle  protein secretion  protein ubiquitination  intracellular signal transduction  protein localization to plasma membrane  
NDEx NetworkRAB40AL
Atlas of Cancer Signalling NetworkRAB40AL
Wikipedia pathwaysRAB40AL
Orthology - Evolution
OrthoDB282808
GeneTree (enSembl)ENSG00000102128
Phylogenetic Trees/Animal Genes : TreeFamRAB40AL
HOVERGENP0C0E4
HOGENOMP0C0E4
Homologs : HomoloGeneRAB40AL
Homology/Alignments : Family Browser (UCSC)RAB40AL
Gene fusions - Rearrangements
Tumor Fusion PortalRAB40AL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB40AL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB40AL
dbVarRAB40AL
ClinVarRAB40AL
1000_GenomesRAB40AL 
Exome Variant ServerRAB40AL
ExAC (Exome Aggregation Consortium)ENSG00000102128
GNOMAD BrowserENSG00000102128
Genetic variants : HAPMAP282808
Genomic Variants (DGV)RAB40AL [DGVbeta]
DECIPHERRAB40AL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB40AL 
Mutations
ICGC Data PortalRAB40AL 
TCGA Data PortalRAB40AL 
Broad Tumor PortalRAB40AL
OASIS PortalRAB40AL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB40AL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB40AL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RAB40AL
DgiDB (Drug Gene Interaction Database)RAB40AL
DoCM (Curated mutations)RAB40AL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB40AL (select a term)
intoGenRAB40AL
Cancer3DRAB40AL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300405   
Orphanet
DisGeNETRAB40AL
MedgenRAB40AL
Genetic Testing Registry RAB40AL
NextProtP0C0E4 [Medical]
TSGene282808
GENETestsRAB40AL
Target ValidationRAB40AL
Huge Navigator RAB40AL [HugePedia]
snp3D : Map Gene to Disease282808
BioCentury BCIQRAB40AL
ClinGenRAB40AL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD282808
Chemical/Pharm GKB GenePA142671103
Clinical trialRAB40AL
Miscellaneous
canSAR (ICR)RAB40AL (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB40AL
EVEXRAB40AL
GoPubMedRAB40AL
iHOPRAB40AL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:31:23 CET 2017

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