Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RAB40C (RAB40C, member RAS oncogene family)

Identity

Alias_namesRASL8C
RAS-like
Alias_symbol (synonym)RARL
Other alias
HGNC (Hugo) RAB40C
LocusID (NCBI) 57799
Atlas_Id 41996
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 639357 and ends at 679273 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAB40C (16p13.3) / LOC100506469 ()RAB40C (16p13.3) / RAD51B (14q24.1)WDR90 (16p13.3) / RAB40C (16p13.3)
RAB40C 16p13.3 / RAD51B 14q24.1WDR90 16p13.3 / RAB40C 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB40C   18285
Cards
Entrez_Gene (NCBI)RAB40C  57799  RAB40C, member RAS oncogene family
AliasesRARL; RASL8C
GeneCards (Weizmann)RAB40C
Ensembl hg19 (Hinxton)ENSG00000197562 [Gene_View]  chr16:639357-679273 [Contig_View]  RAB40C [Vega]
Ensembl hg38 (Hinxton)ENSG00000197562 [Gene_View]  chr16:639357-679273 [Contig_View]  RAB40C [Vega]
ICGC DataPortalENSG00000197562
TCGA cBioPortalRAB40C
AceView (NCBI)RAB40C
Genatlas (Paris)RAB40C
WikiGenes57799
SOURCE (Princeton)RAB40C
Genetics Home Reference (NIH)RAB40C
Genomic and cartography
GoldenPath hg19 (UCSC)RAB40C  -     chr16:639357-679273 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB40C  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblRAB40C - 16p13.3 [CytoView hg19]  RAB40C - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIRAB40C [Mapview hg19]  RAB40C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000584 AY823398 BC001581 BC028696 BG696681
RefSeq transcript (Entrez)NM_001172663 NM_001172664 NM_001172665 NM_001172666 NM_021168
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)RAB40C
Cluster EST : UnigeneHs.459630 [ NCBI ]
CGAP (NCI)Hs.459630
Alternative Splicing GalleryENSG00000197562
Gene ExpressionRAB40C [ NCBI-GEO ]   RAB40C [ EBI - ARRAY_EXPRESS ]   RAB40C [ SEEK ]   RAB40C [ MEM ]
Gene Expression Viewer (FireBrowse)RAB40C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57799
GTEX Portal (Tissue expression)RAB40C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S21
Splice isoforms : SwissVarQ96S21
PhosPhoSitePlusQ96S21
Domaine pattern : Prosite (Expaxy)RAB (PS51419)    SOCS (PS50225)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type    SOCS_box   
Domain families : Pfam (Sanger)Ras (PF00071)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00071    pfam07525   
Domain families : Smart (EMBL)RAB (SM00175)  SOCS (SM00253)  SOCS_box (SM00969)  
Conserved Domain (NCBI)RAB40C
DMDM Disease mutations57799
Blocks (Seattle)RAB40C
SuperfamilyQ96S21
Human Protein AtlasENSG00000197562
Peptide AtlasQ96S21
HPRD10182
IPIIPI00045478   IPI00956103   
Protein Interaction databases
DIP (DOE-UCLA)Q96S21
IntAct (EBI)Q96S21
FunCoupENSG00000197562
BioGRIDRAB40C
STRING (EMBL)RAB40C
ZODIACRAB40C
Ontologies - Pathways
QuickGOQ96S21
Ontology : AmiGOGTPase activity  GTP binding  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  protein ubiquitination  GDP binding  perinuclear region of cytoplasm  
Ontology : EGO-EBIGTPase activity  GTP binding  plasma membrane  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  protein ubiquitination  GDP binding  perinuclear region of cytoplasm  
NDEx NetworkRAB40C
Atlas of Cancer Signalling NetworkRAB40C
Wikipedia pathwaysRAB40C
Orthology - Evolution
OrthoDB57799
GeneTree (enSembl)ENSG00000197562
Phylogenetic Trees/Animal Genes : TreeFamRAB40C
HOVERGENQ96S21
HOGENOMQ96S21
Homologs : HomoloGeneRAB40C
Homology/Alignments : Family Browser (UCSC)RAB40C
Gene fusions - Rearrangements
Fusion : MitelmanRAB40C/RAD51B [16p13.3/14q24.1]  
Fusion : MitelmanWDR90/RAB40C [16p13.3/16p13.3]  [t(16;16)(p13;p13)]  
Fusion: TCGARAB40C 16p13.3 RAD51B 14q24.1 OV
Fusion: TCGAWDR90 16p13.3 RAB40C 16p13.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB40C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB40C
dbVarRAB40C
ClinVarRAB40C
1000_GenomesRAB40C 
Exome Variant ServerRAB40C
ExAC (Exome Aggregation Consortium)RAB40C (select the gene name)
Genetic variants : HAPMAP57799
Genomic Variants (DGV)RAB40C [DGVbeta]
DECIPHER (Syndromes)16:639357-679273  ENSG00000197562
CONAN: Copy Number AnalysisRAB40C 
Mutations
ICGC Data PortalRAB40C 
TCGA Data PortalRAB40C 
Broad Tumor PortalRAB40C
OASIS PortalRAB40C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB40C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB40C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB40C
DgiDB (Drug Gene Interaction Database)RAB40C
DoCM (Curated mutations)RAB40C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB40C (select a term)
intoGenRAB40C
Cancer3DRAB40C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB40C
Genetic Testing Registry RAB40C
NextProtQ96S21 [Medical]
TSGene57799
GENETestsRAB40C
Huge Navigator RAB40C [HugePedia]
snp3D : Map Gene to Disease57799
BioCentury BCIQRAB40C
ClinGenRAB40C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57799
Chemical/Pharm GKB GenePA34139
Clinical trialRAB40C
Miscellaneous
canSAR (ICR)RAB40C (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB40C
EVEXRAB40C
GoPubMedRAB40C
iHOPRAB40C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:16:35 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.