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RAB41 (RAB41, member RAS oncogene family)

Identity

Alias_namesRAB41
Other alias-
HGNC (Hugo) RAB41
LocusID (NCBI) 347517
Atlas_Id 43092
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 69502022 and ends at 69504852 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB41   18293
Cards
Entrez_Gene (NCBI)RAB41  347517  RAB41, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB41
Ensembl hg19 (Hinxton)ENSG00000147127 [Gene_View]  chrX:69502022-69504852 [Contig_View]  RAB41 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147127 [Gene_View]  chrX:69502022-69504852 [Contig_View]  RAB41 [Vega]
ICGC DataPortalENSG00000147127
TCGA cBioPortalRAB41
AceView (NCBI)RAB41
Genatlas (Paris)RAB41
WikiGenes347517
SOURCE (Princeton)RAB41
Genetics Home Reference (NIH)RAB41
Genomic and cartography
GoldenPath hg19 (UCSC)RAB41  -     chrX:69502022-69504852 +  Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB41  -     Xq13.1   [Description]    (hg38-Dec_2013)
EnsemblRAB41 - Xq13.1 [CytoView hg19]  RAB41 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIRAB41 [Mapview hg19]  RAB41 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI126463 BC117239 BC143888
RefSeq transcript (Entrez)NM_001032726
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021267 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)RAB41
Cluster EST : UnigeneHs.276327 [ NCBI ]
CGAP (NCI)Hs.276327
Alternative Splicing GalleryENSG00000147127
Gene ExpressionRAB41 [ NCBI-GEO ]   RAB41 [ EBI - ARRAY_EXPRESS ]   RAB41 [ SEEK ]   RAB41 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347517
GTEX Portal (Tissue expression)RAB41
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JT25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JT25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JT25
Splice isoforms : SwissVarQ5JT25
PhosPhoSitePlusQ5JT25
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
Conserved Domain (NCBI)RAB41
DMDM Disease mutations347517
Blocks (Seattle)RAB41
SuperfamilyQ5JT25
Human Protein AtlasENSG00000147127
Peptide AtlasQ5JT25
IPIIPI00232898   IPI00929731   IPI00964462   
Protein Interaction databases
DIP (DOE-UCLA)Q5JT25
IntAct (EBI)Q5JT25
FunCoupENSG00000147127
BioGRIDRAB41
STRING (EMBL)RAB41
ZODIACRAB41
Ontologies - Pathways
QuickGOQ5JT25
Ontology : AmiGOGolgi membrane  GTPase activity  protein binding  GTP binding  Golgi apparatus  cytosol  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  retrograde transport, endosome to Golgi  
Ontology : EGO-EBIGolgi membrane  GTPase activity  protein binding  GTP binding  Golgi apparatus  cytosol  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  retrograde transport, endosome to Golgi  
NDEx NetworkRAB41
Atlas of Cancer Signalling NetworkRAB41
Wikipedia pathwaysRAB41
Orthology - Evolution
OrthoDB347517
GeneTree (enSembl)ENSG00000147127
Phylogenetic Trees/Animal Genes : TreeFamRAB41
HOVERGENQ5JT25
HOGENOMQ5JT25
Homologs : HomoloGeneRAB41
Homology/Alignments : Family Browser (UCSC)RAB41
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB41
dbVarRAB41
ClinVarRAB41
1000_GenomesRAB41 
Exome Variant ServerRAB41
ExAC (Exome Aggregation Consortium)RAB41 (select the gene name)
Genetic variants : HAPMAP347517
Genomic Variants (DGV)RAB41 [DGVbeta]
DECIPHER (Syndromes)X:69502022-69504852  ENSG00000147127
CONAN: Copy Number AnalysisRAB41 
Mutations
ICGC Data PortalRAB41 
TCGA Data PortalRAB41 
Broad Tumor PortalRAB41
OASIS PortalRAB41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB41  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RAB41
DgiDB (Drug Gene Interaction Database)RAB41
DoCM (Curated mutations)RAB41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB41 (select a term)
intoGenRAB41
Cancer3DRAB41(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB41
Genetic Testing Registry RAB41
NextProtQ5JT25 [Medical]
TSGene347517
GENETestsRAB41
Huge Navigator RAB41 [HugePedia]
snp3D : Map Gene to Disease347517
BioCentury BCIQRAB41
ClinGenRAB41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347517
Chemical/Pharm GKB GenePA34140
Clinical trialRAB41
Miscellaneous
canSAR (ICR)RAB41 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB41
EVEXRAB41
GoPubMedRAB41
iHOPRAB41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:02 CET 2017

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