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RAB42 (RAB42, member RAS oncogene family)

Identity

Alias_namesRAB42, member RAS homolog family
Alias_symbol (synonym)MGC45806
Other alias-
HGNC (Hugo) RAB42
LocusID (NCBI) 115273
Atlas_Id 43567
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28592200 and ends at 28595443 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAB42 (1p35.3) / EHD2 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB42   28702
Cards
Entrez_Gene (NCBI)RAB42  115273  RAB42, member RAS oncogene family
Aliases
GeneCards (Weizmann)RAB42
Ensembl hg19 (Hinxton)ENSG00000188060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188060 [Gene_View]  ENSG00000188060 [Sequence]  chr1:28592200-28595443 [Contig_View]  RAB42 [Vega]
ICGC DataPortalENSG00000188060
TCGA cBioPortalRAB42
AceView (NCBI)RAB42
Genatlas (Paris)RAB42
WikiGenes115273
SOURCE (Princeton)RAB42
Genetics Home Reference (NIH)RAB42
Genomic and cartography
GoldenPath hg38 (UCSC)RAB42  -     chr1:28592200-28595443 +  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB42  -     1p35.3   [Description]    (hg19-Feb_2009)
GoldenPathRAB42 - 1p35.3 [CytoView hg19]  RAB42 - 1p35.3 [CytoView hg38]
ImmunoBaseENSG00000188060
Mapping of homologs : NCBIRAB42 [Mapview hg19]  RAB42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK312176 BC033175 BX110464 CX788289
RefSeq transcript (Entrez)NM_001193532 NM_152304
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB42
Cluster EST : UnigeneHs.660005 [ NCBI ]
CGAP (NCI)Hs.660005
Alternative Splicing GalleryENSG00000188060
Gene ExpressionRAB42 [ NCBI-GEO ]   RAB42 [ EBI - ARRAY_EXPRESS ]   RAB42 [ SEEK ]   RAB42 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115273
GTEX Portal (Tissue expression)RAB42
Human Protein AtlasENSG00000188060-RAB42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4Z0
Splice isoforms : SwissVarQ8N4Z0
PhosPhoSitePlusQ8N4Z0
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB42
DMDM Disease mutations115273
Blocks (Seattle)RAB42
SuperfamilyQ8N4Z0
Human Protein Atlas [tissue]ENSG00000188060-RAB42 [tissue]
Peptide AtlasQ8N4Z0
HPRD14644
IPIIPI00843865   IPI00981312   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4Z0
IntAct (EBI)Q8N4Z0
FunCoupENSG00000188060
BioGRIDRAB42
STRING (EMBL)RAB42
ZODIACRAB42
Ontologies - Pathways
QuickGOQ8N4Z0
Ontology : AmiGOGTPase activity  GTP binding  plasma membrane  small GTPase mediated signal transduction  GDP binding  
Ontology : EGO-EBIGTPase activity  GTP binding  plasma membrane  small GTPase mediated signal transduction  GDP binding  
NDEx NetworkRAB42
Atlas of Cancer Signalling NetworkRAB42
Wikipedia pathwaysRAB42
Orthology - Evolution
OrthoDB115273
GeneTree (enSembl)ENSG00000188060
Phylogenetic Trees/Animal Genes : TreeFamRAB42
HOGENOMQ8N4Z0
Homologs : HomoloGeneRAB42
Homology/Alignments : Family Browser (UCSC)RAB42
Gene fusions - Rearrangements
Fusion : QuiverRAB42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB42
dbVarRAB42
ClinVarRAB42
1000_GenomesRAB42 
Exome Variant ServerRAB42
ExAC (Exome Aggregation Consortium)ENSG00000188060
GNOMAD BrowserENSG00000188060
Varsome BrowserRAB42
Genetic variants : HAPMAP115273
Genomic Variants (DGV)RAB42 [DGVbeta]
DECIPHERRAB42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB42 
Mutations
ICGC Data PortalRAB42 
TCGA Data PortalRAB42 
Broad Tumor PortalRAB42
OASIS PortalRAB42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB42  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB42
Mutations and Diseases : HGMDRAB42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB42
DgiDB (Drug Gene Interaction Database)RAB42
DoCM (Curated mutations)RAB42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB42 (select a term)
intoGenRAB42
Cancer3DRAB42(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRAB42
MedgenRAB42
Genetic Testing Registry RAB42
NextProtQ8N4Z0 [Medical]
TSGene115273
GENETestsRAB42
Target ValidationRAB42
Huge Navigator RAB42 [HugePedia]
snp3D : Map Gene to Disease115273
BioCentury BCIQRAB42
ClinGenRAB42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115273
Chemical/Pharm GKB GenePA134976516
Clinical trialRAB42
Miscellaneous
canSAR (ICR)RAB42 (select the gene name)
DataMed IndexRAB42
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB42
EVEXRAB42
GoPubMedRAB42
iHOPRAB42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:25:38 CEST 2019

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