Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RAB44 (RAB44, member RAS oncogene family)

Identity

Alias_namesRASD3
RASL13
RASD family
Alias_symbol (synonym)dJ431A14.3
Other alias
HGNC (Hugo) RAB44
LocusID (NCBI) 401258
Atlas_Id 42949
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 36697851 and ends at 36733183 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB44   21068
Cards
Entrez_Gene (NCBI)RAB44  401258  RAB44, member RAS oncogene family
AliasesRASD3; RASL13; dJ431A14.3
GeneCards (Weizmann)RAB44
Ensembl hg19 (Hinxton)ENSG00000255587 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255587 [Gene_View]  ENSG00000255587 [Sequence]  chr6:36697851-36733183 [Contig_View]  RAB44 [Vega]
ICGC DataPortalENSG00000255587
TCGA cBioPortalRAB44
AceView (NCBI)RAB44
Genatlas (Paris)RAB44
WikiGenes401258
SOURCE (Princeton)RAB44
Genetics Home Reference (NIH)RAB44
Genomic and cartography
GoldenPath hg38 (UCSC)RAB44  -     chr6:36697851-36733183 +  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB44  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblRAB44 - 6p21.2 [CytoView hg19]  RAB44 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBIRAB44 [Mapview hg19]  RAB44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125083 DN831165
RefSeq transcript (Entrez)NM_001257357 NM_207498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB44
Cluster EST : UnigeneHs.485258 [ NCBI ]
CGAP (NCI)Hs.485258
Alternative Splicing GalleryENSG00000255587
Gene ExpressionRAB44 [ NCBI-GEO ]   RAB44 [ EBI - ARRAY_EXPRESS ]   RAB44 [ SEEK ]   RAB44 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401258
GTEX Portal (Tissue expression)RAB44
Human Protein AtlasENSG00000255587-RAB44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6P3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6P3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6P3
Splice isoforms : SwissVarQ7Z6P3
PhosPhoSitePlusQ7Z6P3
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB44
DMDM Disease mutations401258
Blocks (Seattle)RAB44
SuperfamilyQ7Z6P3
Human Protein Atlas [tissue]ENSG00000255587-RAB44 [tissue]
Peptide AtlasQ7Z6P3
HPRD13470
IPIIPI00164150   IPI00410558   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6P3
IntAct (EBI)Q7Z6P3
FunCoupENSG00000255587
BioGRIDRAB44
STRING (EMBL)RAB44
ZODIACRAB44
Ontologies - Pathways
QuickGOQ7Z6P3
Ontology : AmiGOGTPase activity  calcium ion binding  GTP binding  plasma membrane  intracellular protein transport  Rab protein signal transduction  azurophil granule membrane  specific granule membrane  neutrophil degranulation  
Ontology : EGO-EBIGTPase activity  calcium ion binding  GTP binding  plasma membrane  intracellular protein transport  Rab protein signal transduction  azurophil granule membrane  specific granule membrane  neutrophil degranulation  
NDEx NetworkRAB44
Atlas of Cancer Signalling NetworkRAB44
Wikipedia pathwaysRAB44
Orthology - Evolution
OrthoDB401258
GeneTree (enSembl)ENSG00000255587
Phylogenetic Trees/Animal Genes : TreeFamRAB44
HOVERGENQ7Z6P3
HOGENOMQ7Z6P3
Homologs : HomoloGeneRAB44
Homology/Alignments : Family Browser (UCSC)RAB44
Gene fusions - Rearrangements
Fusion : QuiverRAB44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB44
dbVarRAB44
ClinVarRAB44
1000_GenomesRAB44 
Exome Variant ServerRAB44
ExAC (Exome Aggregation Consortium)ENSG00000255587
GNOMAD BrowserENSG00000255587
Varsome BrowserRAB44
Genetic variants : HAPMAP401258
Genomic Variants (DGV)RAB44 [DGVbeta]
DECIPHERRAB44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB44 
Mutations
ICGC Data PortalRAB44 
TCGA Data PortalRAB44 
Broad Tumor PortalRAB44
OASIS PortalRAB44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB44
DgiDB (Drug Gene Interaction Database)RAB44
DoCM (Curated mutations)RAB44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB44 (select a term)
intoGenRAB44
Cancer3DRAB44(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRAB44
MedgenRAB44
Genetic Testing Registry RAB44
NextProtQ7Z6P3 [Medical]
TSGene401258
GENETestsRAB44
Target ValidationRAB44
Huge Navigator RAB44 [HugePedia]
snp3D : Map Gene to Disease401258
BioCentury BCIQRAB44
ClinGenRAB44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401258
Chemical/Pharm GKB GenePA134912533
Clinical trialRAB44
Miscellaneous
canSAR (ICR)RAB44 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB44
EVEXRAB44
GoPubMedRAB44
iHOPRAB44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:33:57 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.