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RAB6C (RAB6C, member RAS oncogene family)

Identity

Alias_symbol (synonym)WTH3
Other alias
HGNC (Hugo) RAB6C
LocusID (NCBI) 84084
Atlas_Id 53309
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 129979662 and ends at 129982738 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB6C   16525
Cards
Entrez_Gene (NCBI)RAB6C  84084  RAB6C, member RAS oncogene family
AliasesWTH3
GeneCards (Weizmann)RAB6C
Ensembl hg19 (Hinxton)ENSG00000222014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000222014 [Gene_View]  chr2:129979662-129982738 [Contig_View]  RAB6C [Vega]
ICGC DataPortalENSG00000222014
TCGA cBioPortalRAB6C
AceView (NCBI)RAB6C
Genatlas (Paris)RAB6C
WikiGenes84084
SOURCE (Princeton)RAB6C
Genetics Home Reference (NIH)RAB6C
Genomic and cartography
GoldenPath hg38 (UCSC)RAB6C  -     chr2:129979662-129982738 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB6C  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblRAB6C - 2q21.1 [CytoView hg19]  RAB6C - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBIRAB6C [Mapview hg19]  RAB6C [Mapview hg38]
OMIM612909   
Gene and transcription
Genbank (Entrez)AF309646 AK055504 AL136727 BC120998 BC120999
RefSeq transcript (Entrez)NM_032144
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB6C
Cluster EST : UnigeneHs.591552 [ NCBI ]
CGAP (NCI)Hs.591552
Alternative Splicing GalleryENSG00000222014
Gene ExpressionRAB6C [ NCBI-GEO ]   RAB6C [ EBI - ARRAY_EXPRESS ]   RAB6C [ SEEK ]   RAB6C [ MEM ]
Gene Expression Viewer (FireBrowse)RAB6C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84084
GTEX Portal (Tissue expression)RAB6C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0N0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0N0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0N0
Splice isoforms : SwissVarQ9H0N0
PhosPhoSitePlusQ9H0N0
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB6C
DMDM Disease mutations84084
Blocks (Seattle)RAB6C
SuperfamilyQ9H0N0
Human Protein AtlasENSG00000222014
Peptide AtlasQ9H0N0
HPRD15201
Protein Interaction databases
DIP (DOE-UCLA)Q9H0N0
IntAct (EBI)Q9H0N0
FunCoupENSG00000222014
BioGRIDRAB6C
STRING (EMBL)RAB6C
ZODIACRAB6C
Ontologies - Pathways
QuickGOQ9H0N0
Ontology : AmiGOmitotic cell cycle  GTPase activity  GTP binding  intracellular  nucleus  Golgi apparatus  Golgi apparatus  centrosome  cytosol  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  small GTPase mediated signal transduction  regulation of centrosome duplication  retrograde transport, endosome to Golgi  response to drug  
Ontology : EGO-EBImitotic cell cycle  GTPase activity  GTP binding  intracellular  nucleus  Golgi apparatus  Golgi apparatus  centrosome  cytosol  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  small GTPase mediated signal transduction  regulation of centrosome duplication  retrograde transport, endosome to Golgi  response to drug  
NDEx NetworkRAB6C
Atlas of Cancer Signalling NetworkRAB6C
Wikipedia pathwaysRAB6C
Orthology - Evolution
OrthoDB84084
GeneTree (enSembl)ENSG00000222014
Phylogenetic Trees/Animal Genes : TreeFamRAB6C
HOVERGENQ9H0N0
HOGENOMQ9H0N0
Homologs : HomoloGeneRAB6C
Homology/Alignments : Family Browser (UCSC)RAB6C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB6C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB6C
dbVarRAB6C
ClinVarRAB6C
1000_GenomesRAB6C 
Exome Variant ServerRAB6C
ExAC (Exome Aggregation Consortium)RAB6C (select the gene name)
Genetic variants : HAPMAP84084
Genomic Variants (DGV)RAB6C [DGVbeta]
DECIPHERRAB6C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB6C 
Mutations
ICGC Data PortalRAB6C 
TCGA Data PortalRAB6C 
Broad Tumor PortalRAB6C
OASIS PortalRAB6C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB6C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB6C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB6C
DgiDB (Drug Gene Interaction Database)RAB6C
DoCM (Curated mutations)RAB6C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB6C (select a term)
intoGenRAB6C
Cancer3DRAB6C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612909   
Orphanet
MedgenRAB6C
Genetic Testing Registry RAB6C
NextProtQ9H0N0 [Medical]
TSGene84084
GENETestsRAB6C
Target ValidationRAB6C
Huge Navigator RAB6C [HugePedia]
snp3D : Map Gene to Disease84084
BioCentury BCIQRAB6C
ClinGenRAB6C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84084
Chemical/Pharm GKB GenePA34148
Clinical trialRAB6C
Miscellaneous
canSAR (ICR)RAB6C (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB6C
EVEXRAB6C
GoPubMedRAB6C
iHOPRAB6C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:52:15 CEST 2017

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