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RAB9B (RAB9B, member RAS oncogene family)

Identity

Alias_symbol (synonym)RAB9L
Other aliasRab-9L
HGNC (Hugo) RAB9B
LocusID (NCBI) 51209
Atlas_Id 42012
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103822322 and ends at 103832282 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLA-DRB1 (6p21.32) / RAB9B (Xq22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB9B   14090
Cards
Entrez_Gene (NCBI)RAB9B  51209  RAB9B, member RAS oncogene family
AliasesRAB9L; Rab-9L
GeneCards (Weizmann)RAB9B
Ensembl hg19 (Hinxton)ENSG00000123570 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123570 [Gene_View]  ENSG00000123570 [Sequence]  chrX:103822322-103832282 [Contig_View]  RAB9B [Vega]
ICGC DataPortalENSG00000123570
TCGA cBioPortalRAB9B
AceView (NCBI)RAB9B
Genatlas (Paris)RAB9B
WikiGenes51209
SOURCE (Princeton)RAB9B
Genetics Home Reference (NIH)RAB9B
Genomic and cartography
GoldenPath hg38 (UCSC)RAB9B  -     chrX:103822322-103832282 -  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB9B  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblRAB9B - Xq22.2 [CytoView hg19]  RAB9B - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBIRAB9B [Mapview hg19]  RAB9B [Mapview hg38]
OMIM300285   
Gene and transcription
Genbank (Entrez)AB036693 AK313425 BC041336 BC070069 BC093756
RefSeq transcript (Entrez)NM_016370
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB9B
Cluster EST : UnigeneHs.522736 [ NCBI ]
CGAP (NCI)Hs.522736
Alternative Splicing GalleryENSG00000123570
Gene ExpressionRAB9B [ NCBI-GEO ]   RAB9B [ EBI - ARRAY_EXPRESS ]   RAB9B [ SEEK ]   RAB9B [ MEM ]
Gene Expression Viewer (FireBrowse)RAB9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51209
GTEX Portal (Tissue expression)RAB9B
Human Protein AtlasENSG00000123570-RAB9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP90
Splice isoforms : SwissVarQ9NP90
PhosPhoSitePlusQ9NP90
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB9B
DMDM Disease mutations51209
Blocks (Seattle)RAB9B
PDB (SRS)2OCB   
PDB (PDBSum)2OCB   
PDB (IMB)2OCB   
PDB (RSDB)2OCB   
Structural Biology KnowledgeBase2OCB   
SCOP (Structural Classification of Proteins)2OCB   
CATH (Classification of proteins structures)2OCB   
SuperfamilyQ9NP90
Human Protein Atlas [tissue]ENSG00000123570-RAB9B [tissue]
Peptide AtlasQ9NP90
HPRD02237
IPIIPI00014603   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP90
IntAct (EBI)Q9NP90
FunCoupENSG00000123570
BioGRIDRAB9B
STRING (EMBL)RAB9B
ZODIACRAB9B
Ontologies - Pathways
QuickGOQ9NP90
Ontology : AmiGOGTPase activity  protein binding  GTP binding  cytosol  plasma membrane  protein transport  GDP binding  secretory granule membrane  phagocytic vesicle membrane  retrograde transport, endosome to Golgi  identical protein binding  neutrophil degranulation  phagocytic vesicle  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  cytosol  plasma membrane  protein transport  GDP binding  secretory granule membrane  phagocytic vesicle membrane  retrograde transport, endosome to Golgi  identical protein binding  neutrophil degranulation  phagocytic vesicle  
NDEx NetworkRAB9B
Atlas of Cancer Signalling NetworkRAB9B
Wikipedia pathwaysRAB9B
Orthology - Evolution
OrthoDB51209
GeneTree (enSembl)ENSG00000123570
Phylogenetic Trees/Animal Genes : TreeFamRAB9B
HOVERGENQ9NP90
HOGENOMQ9NP90
Homologs : HomoloGeneRAB9B
Homology/Alignments : Family Browser (UCSC)RAB9B
Gene fusions - Rearrangements
Fusion Cancer (Beijing)HLA-DRB1 [6p21.32]  -  RAB9B [Xq22.2]  [FUSC003544]
Fusion : QuiverRAB9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB9B
dbVarRAB9B
ClinVarRAB9B
1000_GenomesRAB9B 
Exome Variant ServerRAB9B
ExAC (Exome Aggregation Consortium)ENSG00000123570
GNOMAD BrowserENSG00000123570
Genetic variants : HAPMAP51209
Genomic Variants (DGV)RAB9B [DGVbeta]
DECIPHERRAB9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB9B 
Mutations
ICGC Data PortalRAB9B 
TCGA Data PortalRAB9B 
Broad Tumor PortalRAB9B
OASIS PortalRAB9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RAB9B
DgiDB (Drug Gene Interaction Database)RAB9B
DoCM (Curated mutations)RAB9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB9B (select a term)
intoGenRAB9B
Cancer3DRAB9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300285   
Orphanet
DisGeNETRAB9B
MedgenRAB9B
Genetic Testing Registry RAB9B
NextProtQ9NP90 [Medical]
TSGene51209
GENETestsRAB9B
Target ValidationRAB9B
Huge Navigator RAB9B [HugePedia]
snp3D : Map Gene to Disease51209
BioCentury BCIQRAB9B
ClinGenRAB9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51209
Chemical/Pharm GKB GenePA34153
Clinical trialRAB9B
Miscellaneous
canSAR (ICR)RAB9B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB9B
EVEXRAB9B
GoPubMedRAB9B
iHOPRAB9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:46:05 CEST 2018

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