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RABGAP1L (RAB GTPase activating protein 1-like)

Identity

Other namesHHL
TBC1D18
HGNC (Hugo) RABGAP1L
LocusID (NCBI) 9910
Location 1q25.1
Location_base_pair Starts at 174844656 and ends at 174927327 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RABGAP1L   24663
Entrez_Gene (NCBI)RABGAP1L  9910  RAB GTPase activating protein 1-like
Cards
GeneCards (Weizmann)RABGAP1L
Ensembl (Hinxton)ENSG00000152061 [Gene_View]  chr1:174844656-174927327 [Contig_View]  RABGAP1L [Vega]
AceView (NCBI)RABGAP1L
Genatlas (Paris)RABGAP1L
SOURCE (Stanford)NM_001035230 NM_001243763 NM_001243764 NM_001243765 NM_014857
Genomic and cartography
GoldenPath (UCSC)RABGAP1L  -  1q25.1   chr1:174844656-174927327 +  1q25.1   [Description]    (hg19-Feb_2009)
EnsemblRABGAP1L - 1q25.1 [CytoView]
Mapping of homologs : NCBIRABGAP1L [Mapview]
OMIM609238   
Gene and transcription
Genbank (Entrez)AA836500 AB007940 AB019490 AB019491 AB019492
RefSeq transcript (SRS)NM_001035230 NM_001243763 NM_001243764 NM_001243765 NM_014857
RefSeq transcript (Entrez)NM_001035230 NM_001243763 NM_001243764 NM_001243765 NM_014857
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004077999
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004077999
Consensus coding sequences : CCDS (NCBI)RABGAP1L
Cluster EST : UnigeneHs.743317 [ SRS ] Hs.743317 [ NCBI ]
CGAP (NCI)Hs.743317
Alternative Splicing : Fast-db (Paris)GSHG0001206
Alternative Splicing GalleryENSG00000152061
Gene ExpressionRABGAP1L [ NCBI-GEO ]   RABGAP1L [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5R372 (SRS) Q5R372 (Uniprot)
NextProtQ5R372
With graphics : InterProQ5R372
Splice isoforms : SwissVarQ5R372(Swissvar)
Domaine pattern : Prosite (SRS)PID (PS01179)    TBC_RABGAP (PS50086)   
Domaine pattern : Prosite (Expaxy)PID (PS01179)    TBC_RABGAP (PS50086)   
Domains : Interpro (SRS)Kinesin-like    PH_like_dom    PTyr_interaction_dom    Rab-GTPase-TBC_dom   
Domains : Interpro (EBI)Kinesin-like    PH_like_dom    PTyr_interaction_dom    Rab-GTPase-TBC_dom   
Related proteins : CluSTrQ5R372
Domain families : Pfam (SRS)DUF3694 (PF12473)    PID (PF00640)    RabGAP-TBC (PF00566)   
Domain families : Pfam (Sanger)DUF3694 (PF12473)    PID (PF00640)    RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam12473    pfam00640    pfam00566   
Domain families : Smart (EMBL)PTB (SM00462)  TBC (SM00164)  
DMDM9910
Blocks (Seattle)Q5R372
PDB (SRS)3HZJ   
PDB (PDBSum)3HZJ   
PDB (IMB)3HZJ   
PDB (RSDB)3HZJ   
Human Protein AtlasENSG00000152061
HPRD16464
IPIIPI00396010   IPI00418300   IPI00477388   IPI00902948   IPI00465119   IPI00641910   IPI00006648   IPI00646639   IPI00334655   IPI01025220   IPI00514224   IPI01022185   IPI00383812   IPI00981480   IPI00982411   
Protein Interaction databases
DIP (DOE-UCLA)Q5R372
IntAct (EBI)Q5R372
FunCoupENSG00000152061
REACTOMERABGAP1L
Protein Interaction Database9910
BioGRIDRABGAP1L
InParanoidQ5R372
Interologous Interaction database Q5R372
IntegromeDBRABGAP1L
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RABGAP1L
SNP (GeneSNP Utah)RABGAP1L
SNP : HGBaseRABGAP1L
Genetic variants : HAPMAPRABGAP1L
Somatic Mutations in Cancer : COSMICRABGAP1L 
CONAN: Copy Number AnalysisRABGAP1L 
Mutations and Diseases : HGMDRABGAP1L
OMIM609238   
GENETests609238   
Disease Genetic AssociationRABGAP1L
Huge Navigator RABGAP1L [HugePedia]  RABGAP1L [HugeCancerGEM]
Genomic VariantsRABGAP1L  RABGAP1L [DGVbeta]
snp3D : Map Gene to Disease9910
General knowledge
Homologs : HomoloGeneRABGAP1L
Homology/Alignments : Family Browser (UCSC)RABGAP1L
Phylogenetic Trees/Animal Genes : TreeFamRABGAP1L
Chemical/Protein Interactions : CTD9910
Chemical/Pharm GKB GenePA134940645
Clinical trialRABGAP1L
Cancer Resource (Charite)ENSG00000152061
Ontology : AmiGORab GTPase activator activity  nucleus  early endosome  Golgi apparatus  Rab GTPase binding  positive regulation of Rab GTPase activity  regulation of protein localization  
Ontology : EGO-EBIRab GTPase activator activity  nucleus  early endosome  Golgi apparatus  Rab GTPase binding  positive regulation of Rab GTPase activity  regulation of protein localization  
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGeneRABGAP1L
iHOPRABGAP1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:31:32 CEST 2013
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