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RABGAP1L (RAB GTPase activating protein 1-like)

Identity

Other namesHHL
TBC1D18
HGNC (Hugo) RABGAP1L
LocusID (NCBI) 9910
Location 1q25.1
Location_base_pair Starts at 174844656 and ends at 174927327 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RABGAP1L   24663
Cards
Entrez_Gene (NCBI)RABGAP1L  9910  RAB GTPase activating protein 1-like
GeneCards (Weizmann)RABGAP1L
Ensembl (Hinxton)ENSG00000152061 [Gene_View]  chr1:174844656-174927327 [Contig_View]  RABGAP1L [Vega]
ICGC DataPortalENSG00000152061
cBioPortalRABGAP1L
AceView (NCBI)RABGAP1L
Genatlas (Paris)RABGAP1L
WikiGenes9910
SOURCE (Princeton)NM_001035230 NM_001243763 NM_001243764 NM_001243765 NM_014857
Genomic and cartography
GoldenPath (UCSC)RABGAP1L  -  1q25.1   chr1:174844656-174927327 +  1q25.1   [Description]    (hg19-Feb_2009)
EnsemblRABGAP1L - 1q25.1 [CytoView]
Mapping of homologs : NCBIRABGAP1L [Mapview]
OMIM609238   
Gene and transcription
Genbank (Entrez)AA836500 AB007940 AB019490 AB019491 AB019492
RefSeq transcript (Entrez)NM_001035230 NM_001243763 NM_001243764 NM_001243765 NM_014857
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004929293
Consensus coding sequences : CCDS (NCBI)RABGAP1L
Cluster EST : UnigeneHs.744937 [ NCBI ]
CGAP (NCI)Hs.744937
Alternative Splicing : Fast-db (Paris)GSHG0001206
Alternative Splicing GalleryENSG00000152061
Gene ExpressionRABGAP1L [ NCBI-GEO ]     RABGAP1L [ SEEK ]   RABGAP1L [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5R372 (Uniprot)
NextProtQ5R372  [Medical]
With graphics : InterProQ5R372
Splice isoforms : SwissVarQ5R372 (Swissvar)
Domaine pattern : Prosite (Expaxy)PID (PS01179)    TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Kinesin-like [organisation]   PH_like_dom [organisation]   PTB/PI_dom [organisation]   Rab-GTPase-TBC_dom [organisation]  
Related proteins : CluSTrQ5R372
Domain families : Pfam (Sanger)DUF3694 (PF12473)    PID (PF00640)    RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam12473    pfam00640    pfam00566   
Domain families : Smart (EMBL)PTB (SM00462)  TBC (SM00164)  
DMDM Disease mutations9910
Blocks (Seattle)Q5R372
PDB (SRS)3HZJ   
PDB (PDBSum)3HZJ   
PDB (IMB)3HZJ   
PDB (RSDB)3HZJ   
Human Protein AtlasENSG00000152061 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ5R372
HPRD16464
IPIIPI00396010   IPI00418300   IPI00477388   IPI00902948   IPI00465119   IPI00641910   IPI00006648   IPI00646639   IPI00334655   IPI01025220   IPI00514224   IPI01022185   IPI00383812   IPI00981480   IPI00982411   
Protein Interaction databases
DIP (DOE-UCLA)Q5R372
IntAct (EBI)Q5R372
FunCoupENSG00000152061
BioGRIDRABGAP1L
InParanoidQ5R372
Interologous Interaction database Q5R372
IntegromeDBRABGAP1L
STRING (EMBL)RABGAP1L
Ontologies - Pathways
Ontology : AmiGORab GTPase activator activity  nucleus  early endosome  Golgi apparatus  Rab GTPase binding  positive regulation of Rab GTPase activity  positive regulation of Rab GTPase activity  regulation of protein localization  
Ontology : EGO-EBIRab GTPase activator activity  nucleus  early endosome  Golgi apparatus  Rab GTPase binding  positive regulation of Rab GTPase activity  positive regulation of Rab GTPase activity  regulation of protein localization  
Protein Interaction DatabaseRABGAP1L
Wikipedia pathwaysRABGAP1L
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RABGAP1L
snp3D : Map Gene to Disease9910
SNP (GeneSNP Utah)RABGAP1L
SNP : HGBaseRABGAP1L
Genetic variants : HAPMAPRABGAP1L
Exome VariantRABGAP1L
1000_GenomesRABGAP1L 
ICGC programENSG00000152061 
Somatic Mutations in Cancer : COSMICRABGAP1L 
CONAN: Copy Number AnalysisRABGAP1L 
Mutations and Diseases : HGMDRABGAP1L
Mutations and Diseases : intOGenRABGAP1L
Genomic VariantsRABGAP1L  RABGAP1L [DGVbeta]
dbVarRABGAP1L
ClinVarRABGAP1L
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM609238   
MedgenRABGAP1L
GENETestsRABGAP1L
Disease Genetic AssociationRABGAP1L
Huge Navigator RABGAP1L [HugePedia]  RABGAP1L [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRABGAP1L
Homology/Alignments : Family Browser (UCSC)RABGAP1L
Phylogenetic Trees/Animal Genes : TreeFamRABGAP1L
Chemical/Protein Interactions : CTD9910
Chemical/Pharm GKB GenePA134940645
Clinical trialRABGAP1L
Cancer Resource (Charite)ENSG00000152061
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
CoreMineRABGAP1L
iHOPRABGAP1L
OncoSearchRABGAP1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:13:57 CEST 2014

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