Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RABGGTA (Rab geranylgeranyltransferase alpha subunit)

Identity

Alias_symbol (synonym)PTAR3
Other alias
HGNC (Hugo) RABGGTA
LocusID (NCBI) 5875
Atlas_Id 72462
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24265538 and ends at 24271627 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DHRS1 (14q12) / RABGGTA (14q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RABGGTA   9795
Cards
Entrez_Gene (NCBI)RABGGTA  5875  Rab geranylgeranyltransferase alpha subunit
AliasesPTAR3
GeneCards (Weizmann)RABGGTA
Ensembl hg19 (Hinxton)ENSG00000100949 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100949 [Gene_View]  chr14:24265538-24271627 [Contig_View]  RABGGTA [Vega]
ICGC DataPortalENSG00000100949
TCGA cBioPortalRABGGTA
AceView (NCBI)RABGGTA
Genatlas (Paris)RABGGTA
WikiGenes5875
SOURCE (Princeton)RABGGTA
Genetics Home Reference (NIH)RABGGTA
Genomic and cartography
GoldenPath hg38 (UCSC)RABGGTA  -     chr14:24265538-24271627 -  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RABGGTA  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblRABGGTA - 14q12 [CytoView hg19]  RABGGTA - 14q12 [CytoView hg38]
Mapping of homologs : NCBIRABGGTA [Mapview hg19]  RABGGTA [Mapview hg38]
OMIM601905   
Gene and transcription
Genbank (Entrez)AK291347 AK292613 AK303247 AK308715 AL547259
RefSeq transcript (Entrez)NM_004581 NM_182836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RABGGTA
Cluster EST : UnigeneHs.377992 [ NCBI ]
CGAP (NCI)Hs.377992
Alternative Splicing GalleryENSG00000100949
Gene ExpressionRABGGTA [ NCBI-GEO ]   RABGGTA [ EBI - ARRAY_EXPRESS ]   RABGGTA [ SEEK ]   RABGGTA [ MEM ]
Gene Expression Viewer (FireBrowse)RABGGTA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5875
GTEX Portal (Tissue expression)RABGGTA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92696   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92696  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92696
Splice isoforms : SwissVarQ92696
Catalytic activity : Enzyme2.5.1.60 [ Enzyme-Expasy ]   2.5.1.602.5.1.60 [ IntEnz-EBI ]   2.5.1.60 [ BRENDA ]   2.5.1.60 [ KEGG ]   
PhosPhoSitePlusQ92696
Domaine pattern : Prosite (Expaxy)LRR (PS51450)    PFTA (PS51147)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Prenyl_trans_a    RabGGT_asu_insert-domain    RabGGTase_alpha   
Domain families : Pfam (Sanger)PPTA (PF01239)    RabGGT_insert (PF07711)   
Domain families : Pfam (NCBI)pfam01239    pfam07711   
Domain structure : Prodom (Prabi Lyon)RabGG_trans_A (PD331837)   
Conserved Domain (NCBI)RABGGTA
DMDM Disease mutations5875
Blocks (Seattle)RABGGTA
SuperfamilyQ92696
Human Protein AtlasENSG00000100949
Peptide AtlasQ92696
HPRD03547
IPIIPI00022664   IPI01009894   
Protein Interaction databases
DIP (DOE-UCLA)Q92696
IntAct (EBI)Q92696
FunCoupENSG00000100949
BioGRIDRABGGTA
STRING (EMBL)RABGGTA
ZODIACRABGGTA
Ontologies - Pathways
QuickGOQ92696
Ontology : AmiGORab geranylgeranyltransferase activity  cytosol  plasma membrane  Rab-protein geranylgeranyltransferase complex  protein complex assembly  cellular protein modification process  visual perception  zinc ion binding  Rab GTPase binding  protein geranylgeranylation  regulation of apoptotic process  protein heterodimerization activity  
Ontology : EGO-EBIRab geranylgeranyltransferase activity  cytosol  plasma membrane  Rab-protein geranylgeranyltransferase complex  protein complex assembly  cellular protein modification process  visual perception  zinc ion binding  Rab GTPase binding  protein geranylgeranylation  regulation of apoptotic process  protein heterodimerization activity  
NDEx NetworkRABGGTA
Atlas of Cancer Signalling NetworkRABGGTA
Wikipedia pathwaysRABGGTA
Orthology - Evolution
OrthoDB5875
GeneTree (enSembl)ENSG00000100949
Phylogenetic Trees/Animal Genes : TreeFamRABGGTA
HOVERGENQ92696
HOGENOMQ92696
Homologs : HomoloGeneRABGGTA
Homology/Alignments : Family Browser (UCSC)RABGGTA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRABGGTA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RABGGTA
dbVarRABGGTA
ClinVarRABGGTA
1000_GenomesRABGGTA 
Exome Variant ServerRABGGTA
ExAC (Exome Aggregation Consortium)RABGGTA (select the gene name)
Genetic variants : HAPMAP5875
Genomic Variants (DGV)RABGGTA [DGVbeta]
DECIPHERRABGGTA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRABGGTA 
Mutations
ICGC Data PortalRABGGTA 
TCGA Data PortalRABGGTA 
Broad Tumor PortalRABGGTA
OASIS PortalRABGGTA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRABGGTA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRABGGTA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RABGGTA
DgiDB (Drug Gene Interaction Database)RABGGTA
DoCM (Curated mutations)RABGGTA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RABGGTA (select a term)
intoGenRABGGTA
Cancer3DRABGGTA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601905   
Orphanet
MedgenRABGGTA
Genetic Testing Registry RABGGTA
NextProtQ92696 [Medical]
TSGene5875
GENETestsRABGGTA
Target ValidationRABGGTA
Huge Navigator RABGGTA [HugePedia]
snp3D : Map Gene to Disease5875
BioCentury BCIQRABGGTA
ClinGenRABGGTA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5875
Chemical/Pharm GKB GenePA34156
Clinical trialRABGGTA
Miscellaneous
canSAR (ICR)RABGGTA (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRABGGTA
EVEXRABGGTA
GoPubMedRABGGTA
iHOPRABGGTA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:35:47 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.