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RABIF (RAB interacting factor)

Identity

Alias_namesRASGRF3
Alias_symbol (synonym)mss4
Other aliasMSS4
RASGFR3
HGNC (Hugo) RABIF
LocusID (NCBI) 5877
Atlas_Id 43443
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 202878282 and ends at 202889257 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RABIF   9797
Cards
Entrez_Gene (NCBI)RABIF  5877  RAB interacting factor
AliasesMSS4; RASGFR3; RASGRF3
GeneCards (Weizmann)RABIF
Ensembl hg19 (Hinxton)ENSG00000183155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183155 [Gene_View]  chr1:202878282-202889257 [Contig_View]  RABIF [Vega]
ICGC DataPortalENSG00000183155
TCGA cBioPortalRABIF
AceView (NCBI)RABIF
Genatlas (Paris)RABIF
WikiGenes5877
SOURCE (Princeton)RABIF
Genetics Home Reference (NIH)RABIF
Genomic and cartography
GoldenPath hg38 (UCSC)RABIF  -     chr1:202878282-202889257 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RABIF  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblRABIF - 1q32.1 [CytoView hg19]  RABIF - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIRABIF [Mapview hg19]  RABIF [Mapview hg38]
OMIM603417   
Gene and transcription
Genbank (Entrez)AK223538 AK311900 BC018488 BC037392 BQ898100
RefSeq transcript (Entrez)NM_002871
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RABIF
Cluster EST : UnigeneHs.90875 [ NCBI ]
CGAP (NCI)Hs.90875
Alternative Splicing GalleryENSG00000183155
Gene ExpressionRABIF [ NCBI-GEO ]   RABIF [ EBI - ARRAY_EXPRESS ]   RABIF [ SEEK ]   RABIF [ MEM ]
Gene Expression Viewer (FireBrowse)RABIF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5877
GTEX Portal (Tissue expression)RABIF
Human Protein AtlasENSG00000183155-RABIF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47224   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47224  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47224
Splice isoforms : SwissVarP47224
PhosPhoSitePlusP47224
Domaine pattern : Prosite (Expaxy)MSS4 (PS51796)   
Domains : Interpro (EBI)Mss4    Mss4-like    Mss4/transl-control_tumor   
Domain families : Pfam (Sanger)Mss4 (PF04421)   
Domain families : Pfam (NCBI)pfam04421   
Conserved Domain (NCBI)RABIF
DMDM Disease mutations5877
Blocks (Seattle)RABIF
PDB (SRS)1FWQ    2FU5   
PDB (PDBSum)1FWQ    2FU5   
PDB (IMB)1FWQ    2FU5   
PDB (RSDB)1FWQ    2FU5   
Structural Biology KnowledgeBase1FWQ    2FU5   
SCOP (Structural Classification of Proteins)1FWQ    2FU5   
CATH (Classification of proteins structures)1FWQ    2FU5   
SuperfamilyP47224
Human Protein Atlas [tissue]ENSG00000183155-RABIF [tissue]
Peptide AtlasP47224
HPRD04566
IPIIPI00023939   
Protein Interaction databases
DIP (DOE-UCLA)P47224
IntAct (EBI)P47224
FunCoupENSG00000183155
BioGRIDRABIF
STRING (EMBL)RABIF
ZODIACRABIF
Ontologies - Pathways
QuickGOP47224
Ontology : AmiGOguanyl-nucleotide exchange factor activity  guanyl-nucleotide exchange factor activity  protein binding  cytosol  post-Golgi vesicle-mediated transport  small GTPase mediated signal transduction  zinc ion binding  protein transport  membrane  positive regulation of GTPase activity  membrane fusion  
Ontology : EGO-EBIguanyl-nucleotide exchange factor activity  guanyl-nucleotide exchange factor activity  protein binding  cytosol  post-Golgi vesicle-mediated transport  small GTPase mediated signal transduction  zinc ion binding  protein transport  membrane  positive regulation of GTPase activity  membrane fusion  
NDEx NetworkRABIF
Atlas of Cancer Signalling NetworkRABIF
Wikipedia pathwaysRABIF
Orthology - Evolution
OrthoDB5877
GeneTree (enSembl)ENSG00000183155
Phylogenetic Trees/Animal Genes : TreeFamRABIF
HOVERGENP47224
HOGENOMP47224
Homologs : HomoloGeneRABIF
Homology/Alignments : Family Browser (UCSC)RABIF
Gene fusions - Rearrangements
Fusion: Tumor Portal RABIF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRABIF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RABIF
dbVarRABIF
ClinVarRABIF
1000_GenomesRABIF 
Exome Variant ServerRABIF
ExAC (Exome Aggregation Consortium)ENSG00000183155
GNOMAD BrowserENSG00000183155
Genetic variants : HAPMAP5877
Genomic Variants (DGV)RABIF [DGVbeta]
DECIPHERRABIF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRABIF 
Mutations
ICGC Data PortalRABIF 
TCGA Data PortalRABIF 
Broad Tumor PortalRABIF
OASIS PortalRABIF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRABIF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRABIF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RABIF
DgiDB (Drug Gene Interaction Database)RABIF
DoCM (Curated mutations)RABIF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RABIF (select a term)
intoGenRABIF
Cancer3DRABIF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603417   
Orphanet
MedgenRABIF
Genetic Testing Registry RABIF
NextProtP47224 [Medical]
TSGene5877
GENETestsRABIF
Target ValidationRABIF
Huge Navigator RABIF [HugePedia]
snp3D : Map Gene to Disease5877
BioCentury BCIQRABIF
ClinGenRABIF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5877
Chemical/Pharm GKB GenePA34158
Clinical trialRABIF
Miscellaneous
canSAR (ICR)RABIF (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRABIF
EVEXRABIF
GoPubMedRABIF
iHOPRABIF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:07:49 CET 2017

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