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RABIF (RAB interacting factor)

Identity

Alias (NCBI)MSS4
RASGFR3
RASGRF3
HGNC (Hugo) RABIF
HGNC Alias symbmss4
HGNC Previous nameRASGRF3
LocusID (NCBI) 5877
Atlas_Id 43443
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 202878282 and ends at 202889149 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RABIF   9797
Cards
Entrez_Gene (NCBI)RABIF    RAB interacting factor
AliasesMSS4; RASGFR3; RASGRF3
GeneCards (Weizmann)RABIF
Ensembl hg19 (Hinxton)ENSG00000183155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183155 [Gene_View]  ENSG00000183155 [Sequence]  chr1:202878282-202889149 [Contig_View]  RABIF [Vega]
ICGC DataPortalENSG00000183155
TCGA cBioPortalRABIF
AceView (NCBI)RABIF
Genatlas (Paris)RABIF
SOURCE (Princeton)RABIF
Genetics Home Reference (NIH)RABIF
Genomic and cartography
GoldenPath hg38 (UCSC)RABIF  -     chr1:202878282-202889149 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RABIF  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathRABIF - 1q32.1 [CytoView hg19]  RABIF - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000183155
Genome Data Viewer NCBIRABIF [Mapview hg19]  
OMIM603417   
Gene and transcription
Genbank (Entrez)AK223538 AK311900 BC018488 BC037392 BQ898100
RefSeq transcript (Entrez)NM_002871
Consensus coding sequences : CCDS (NCBI)RABIF
Gene ExpressionRABIF [ NCBI-GEO ]   RABIF [ EBI - ARRAY_EXPRESS ]   RABIF [ SEEK ]   RABIF [ MEM ]
Gene Expression Viewer (FireBrowse)RABIF [ Firebrowse - Broad ]
GenevisibleExpression of RABIF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5877
GTEX Portal (Tissue expression)RABIF
Human Protein AtlasENSG00000183155-RABIF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47224   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47224  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47224
PhosPhoSitePlusP47224
Domaine pattern : Prosite (Expaxy)MSS4 (PS51796)   
Domains : Interpro (EBI)Mss4    Mss4-like_sf    Mss4/transl-control_tumour   
Domain families : Pfam (Sanger)Mss4 (PF04421)   
Domain families : Pfam (NCBI)pfam04421   
Conserved Domain (NCBI)RABIF
PDB (RSDB)1FWQ    2FU5   
PDB Europe1FWQ    2FU5   
PDB (PDBSum)1FWQ    2FU5   
PDB (IMB)1FWQ    2FU5   
Structural Biology KnowledgeBase1FWQ    2FU5   
SCOP (Structural Classification of Proteins)1FWQ    2FU5   
CATH (Classification of proteins structures)1FWQ    2FU5   
SuperfamilyP47224
AlphaFold pdb e-kbP47224   
Human Protein Atlas [tissue]ENSG00000183155-RABIF [tissue]
HPRD04566
Protein Interaction databases
DIP (DOE-UCLA)P47224
IntAct (EBI)P47224
BioGRIDRABIF
STRING (EMBL)RABIF
ZODIACRABIF
Ontologies - Pathways
QuickGOP47224
Ontology : AmiGOguanyl-nucleotide exchange factor activity  guanyl-nucleotide exchange factor activity  protein binding  cytosol  post-Golgi vesicle-mediated transport  small GTPase mediated signal transduction  zinc ion binding  zinc ion binding  protein transport  membrane  regulation of catalytic activity  membrane fusion  
Ontology : EGO-EBIguanyl-nucleotide exchange factor activity  guanyl-nucleotide exchange factor activity  protein binding  cytosol  post-Golgi vesicle-mediated transport  small GTPase mediated signal transduction  zinc ion binding  zinc ion binding  protein transport  membrane  regulation of catalytic activity  membrane fusion  
NDEx NetworkRABIF
Atlas of Cancer Signalling NetworkRABIF
Wikipedia pathwaysRABIF
Orthology - Evolution
OrthoDB5877
GeneTree (enSembl)ENSG00000183155
Phylogenetic Trees/Animal Genes : TreeFamRABIF
Homologs : HomoloGeneRABIF
Homology/Alignments : Family Browser (UCSC)RABIF
Gene fusions - Rearrangements
Fusion : QuiverRABIF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRABIF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RABIF
dbVarRABIF
ClinVarRABIF
MonarchRABIF
1000_GenomesRABIF 
Exome Variant ServerRABIF
GNOMAD BrowserENSG00000183155
Varsome BrowserRABIF
ACMGRABIF variants
VarityP47224
Genomic Variants (DGV)RABIF [DGVbeta]
DECIPHERRABIF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRABIF 
Mutations
ICGC Data PortalRABIF 
TCGA Data PortalRABIF 
Broad Tumor PortalRABIF
OASIS PortalRABIF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRABIF  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRABIF
Mutations and Diseases : HGMDRABIF
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRABIF
DgiDB (Drug Gene Interaction Database)RABIF
DoCM (Curated mutations)RABIF
CIViC (Clinical Interpretations of Variants in Cancer)RABIF
Cancer3DRABIF
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603417   
Orphanet
DisGeNETRABIF
MedgenRABIF
Genetic Testing Registry RABIF
NextProtP47224 [Medical]
GENETestsRABIF
Target ValidationRABIF
Huge Navigator RABIF [HugePedia]
ClinGenRABIF
Clinical trials, drugs, therapy
MyCancerGenomeRABIF
Protein Interactions : CTDRABIF
Pharm GKB GenePA34158
PharosP47224
Clinical trialRABIF
Miscellaneous
canSAR (ICR)RABIF
HarmonizomeRABIF
DataMed IndexRABIF
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRABIF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:01 CEST 2021

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