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RABL2B (RAB, member of RAS oncogene family-like 2B)

Identity

Other alias-
HGNC (Hugo) RABL2B
LocusID (NCBI) 11158
Atlas_Id 42016
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 51205920 and ends at 51222087 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NMNAT1 (1p36.22) / RABL2B (22q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RABL2B   9800
Cards
Entrez_Gene (NCBI)RABL2B  11158  RAB, member of RAS oncogene family-like 2B
Aliases
GeneCards (Weizmann)RABL2B
Ensembl hg19 (Hinxton)ENSG00000079974 [Gene_View]  chr22:51205920-51222087 [Contig_View]  RABL2B [Vega]
Ensembl hg38 (Hinxton)ENSG00000079974 [Gene_View]  chr22:51205920-51222087 [Contig_View]  RABL2B [Vega]
ICGC DataPortalENSG00000079974
TCGA cBioPortalRABL2B
AceView (NCBI)RABL2B
Genatlas (Paris)RABL2B
WikiGenes11158
SOURCE (Princeton)RABL2B
Genetics Home Reference (NIH)RABL2B
Genomic and cartography
GoldenPath hg19 (UCSC)RABL2B  -     chr22:51205920-51222087 -  22q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RABL2B  -     22q13.33   [Description]    (hg38-Dec_2013)
EnsemblRABL2B - 22q13.33 [CytoView hg19]  RABL2B - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBIRABL2B [Mapview hg19]  RABL2B [Mapview hg38]
OMIM605413   
Gene and transcription
Genbank (Entrez)AF095352 AI701071 AK094341 AK308268 AK313442
RefSeq transcript (Entrez)NM_001003789 NM_001130919 NM_001130920 NM_001130921 NM_001130922 NM_001130923 NM_007081
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011526 NW_004929431
Consensus coding sequences : CCDS (NCBI)RABL2B
Cluster EST : UnigeneHs.584862 [ NCBI ]
CGAP (NCI)Hs.584862
Alternative Splicing GalleryENSG00000079974
Gene ExpressionRABL2B [ NCBI-GEO ]   RABL2B [ EBI - ARRAY_EXPRESS ]   RABL2B [ SEEK ]   RABL2B [ MEM ]
Gene Expression Viewer (FireBrowse)RABL2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11158
GTEX Portal (Tissue expression)RABL2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNT1
Splice isoforms : SwissVarQ9UNT1
PhosPhoSitePlusQ9UNT1
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RABL2B
DMDM Disease mutations11158
Blocks (Seattle)RABL2B
SuperfamilyQ9UNT1
Human Protein AtlasENSG00000079974
Peptide AtlasQ9UNT1
HPRD10395
IPIIPI00009415   IPI00220774   IPI00853263   IPI00853329   IPI00853529   IPI00853111   IPI00916779   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNT1
IntAct (EBI)Q9UNT1
FunCoupENSG00000079974
BioGRIDRABL2B
STRING (EMBL)RABL2B
ZODIACRABL2B
Ontologies - Pathways
QuickGOQ9UNT1
Ontology : AmiGOGTPase activity  GTP binding  intracellular  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  membrane  
Ontology : EGO-EBIGTPase activity  GTP binding  intracellular  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  membrane  
NDEx NetworkRABL2B
Atlas of Cancer Signalling NetworkRABL2B
Wikipedia pathwaysRABL2B
Orthology - Evolution
OrthoDB11158
GeneTree (enSembl)ENSG00000079974
Phylogenetic Trees/Animal Genes : TreeFamRABL2B
HOVERGENQ9UNT1
HOGENOMQ9UNT1
Homologs : HomoloGeneRABL2B
Homology/Alignments : Family Browser (UCSC)RABL2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRABL2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RABL2B
dbVarRABL2B
ClinVarRABL2B
1000_GenomesRABL2B 
Exome Variant ServerRABL2B
ExAC (Exome Aggregation Consortium)RABL2B (select the gene name)
Genetic variants : HAPMAP11158
Genomic Variants (DGV)RABL2B [DGVbeta]
DECIPHER (Syndromes)22:51205920-51222087  ENSG00000079974
CONAN: Copy Number AnalysisRABL2B 
Mutations
ICGC Data PortalRABL2B 
TCGA Data PortalRABL2B 
Broad Tumor PortalRABL2B
OASIS PortalRABL2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRABL2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRABL2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RABL2B
DgiDB (Drug Gene Interaction Database)RABL2B
DoCM (Curated mutations)RABL2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RABL2B (select a term)
intoGenRABL2B
Cancer3DRABL2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605413   
Orphanet
MedgenRABL2B
Genetic Testing Registry RABL2B
NextProtQ9UNT1 [Medical]
TSGene11158
GENETestsRABL2B
Huge Navigator RABL2B [HugePedia]
snp3D : Map Gene to Disease11158
BioCentury BCIQRABL2B
ClinGenRABL2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11158
Chemical/Pharm GKB GenePA34160
Clinical trialRABL2B
Miscellaneous
canSAR (ICR)RABL2B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRABL2B
EVEXRABL2B
GoPubMedRABL2B
iHOPRABL2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:09 CET 2017

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