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RABL3 (RAB, member of RAS oncogene family like 3)

Identity

Alias_namesRAB
Alias_symbol (synonym)MGC23920
Other alias-
HGNC (Hugo) RABL3
LocusID (NCBI) 285282
Atlas_Id 42017
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 120686681 and ends at 120742537 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RYK (3q22.2) / RABL3 (3q13.33)RYK 3q22.2 / RABL3 3q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RABL3   18072
Cards
Entrez_Gene (NCBI)RABL3  285282  RAB, member of RAS oncogene family like 3
Aliases
GeneCards (Weizmann)RABL3
Ensembl hg19 (Hinxton)ENSG00000144840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144840 [Gene_View]  chr3:120686681-120742537 [Contig_View]  RABL3 [Vega]
ICGC DataPortalENSG00000144840
TCGA cBioPortalRABL3
AceView (NCBI)RABL3
Genatlas (Paris)RABL3
WikiGenes285282
SOURCE (Princeton)RABL3
Genetics Home Reference (NIH)RABL3
Genomic and cartography
GoldenPath hg38 (UCSC)RABL3  -     chr3:120686681-120742537 -  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RABL3  -     3q13.33   [Description]    (hg19-Feb_2009)
EnsemblRABL3 - 3q13.33 [CytoView hg19]  RABL3 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBIRABL3 [Mapview hg19]  RABL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025772 AK293085 BC020832 BX647559 BX647593
RefSeq transcript (Entrez)NM_173825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RABL3
Cluster EST : UnigeneHs.444360 [ NCBI ]
CGAP (NCI)Hs.444360
Alternative Splicing GalleryENSG00000144840
Gene ExpressionRABL3 [ NCBI-GEO ]   RABL3 [ EBI - ARRAY_EXPRESS ]   RABL3 [ SEEK ]   RABL3 [ MEM ]
Gene Expression Viewer (FireBrowse)RABL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285282
GTEX Portal (Tissue expression)RABL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYI8
Splice isoforms : SwissVarQ5HYI8
PhosPhoSitePlusQ5HYI8
Domains : Interpro (EBI)MIRO-like    P-loop_NTPase   
Domain families : Pfam (Sanger)Roc (PF08477)   
Domain families : Pfam (NCBI)pfam08477   
Conserved Domain (NCBI)RABL3
DMDM Disease mutations285282
Blocks (Seattle)RABL3
SuperfamilyQ5HYI8
Human Protein AtlasENSG00000144840
Peptide AtlasQ5HYI8
HPRD15203
IPIIPI00102897   IPI00946386   IPI00946067   IPI00947222   IPI00946728   IPI00946230   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYI8
IntAct (EBI)Q5HYI8
FunCoupENSG00000144840
BioGRIDRABL3
STRING (EMBL)RABL3
ZODIACRABL3
Ontologies - Pathways
QuickGOQ5HYI8
Ontology : AmiGOGTP binding  intracellular  small GTPase mediated signal transduction  
Ontology : EGO-EBIGTP binding  intracellular  small GTPase mediated signal transduction  
NDEx NetworkRABL3
Atlas of Cancer Signalling NetworkRABL3
Wikipedia pathwaysRABL3
Orthology - Evolution
OrthoDB285282
GeneTree (enSembl)ENSG00000144840
Phylogenetic Trees/Animal Genes : TreeFamRABL3
HOVERGENQ5HYI8
HOGENOMQ5HYI8
Homologs : HomoloGeneRABL3
Homology/Alignments : Family Browser (UCSC)RABL3
Gene fusions - Rearrangements
Fusion : MitelmanRYK/RABL3 [3q22.2/3q13.33]  [t(3;3)(q13;q22)]  
Fusion: TCGARYK 3q22.2 RABL3 3q13.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRABL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RABL3
dbVarRABL3
ClinVarRABL3
1000_GenomesRABL3 
Exome Variant ServerRABL3
ExAC (Exome Aggregation Consortium)RABL3 (select the gene name)
Genetic variants : HAPMAP285282
Genomic Variants (DGV)RABL3 [DGVbeta]
DECIPHERRABL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRABL3 
Mutations
ICGC Data PortalRABL3 
TCGA Data PortalRABL3 
Broad Tumor PortalRABL3
OASIS PortalRABL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRABL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRABL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RABL3
DgiDB (Drug Gene Interaction Database)RABL3
DoCM (Curated mutations)RABL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RABL3 (select a term)
intoGenRABL3
Cancer3DRABL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRABL3
Genetic Testing Registry RABL3
NextProtQ5HYI8 [Medical]
TSGene285282
GENETestsRABL3
Huge Navigator RABL3 [HugePedia]
snp3D : Map Gene to Disease285282
BioCentury BCIQRABL3
ClinGenRABL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285282
Chemical/Pharm GKB GenePA34161
Clinical trialRABL3
Miscellaneous
canSAR (ICR)RABL3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRABL3
EVEXRABL3
GoPubMedRABL3
iHOPRABL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:34:02 CEST 2017

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