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RABL6 (RAB, member RAS oncogene family-like 6)

Identity

Alias_namesC9orf86
chromosome 9 open reading frame 86
Alias_symbol (synonym)FLJ10101
FLJ13045
pp8875
bA216L13.9
Parf
RBEL1
Other aliasPARF
HGNC (Hugo) RABL6
LocusID (NCBI) 55684
Atlas_Id 50069
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139702374 and ends at 139735639 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC183 (9q34.3) / RABL6 (9q34.3)EDF1 (9q34.3) / RABL6 (9q34.3)RABL6 (9q34.3) / CDC16 (13q34)
RABL6 (9q34.3) / TMEM141 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RABL6   24703
Cards
Entrez_Gene (NCBI)RABL6  55684  RAB, member RAS oncogene family-like 6
AliasesC9orf86; PARF; RBEL1; pp8875
GeneCards (Weizmann)RABL6
Ensembl hg19 (Hinxton)ENSG00000196642 [Gene_View]  chr9:139702374-139735639 [Contig_View]  RABL6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196642 [Gene_View]  chr9:139702374-139735639 [Contig_View]  RABL6 [Vega]
ICGC DataPortalENSG00000196642
TCGA cBioPortalRABL6
AceView (NCBI)RABL6
Genatlas (Paris)RABL6
WikiGenes55684
SOURCE (Princeton)RABL6
Genetics Home Reference (NIH)RABL6
Genomic and cartography
GoldenPath hg19 (UCSC)RABL6  -     chr9:139702374-139735639 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RABL6  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblRABL6 - 9q34.3 [CytoView hg19]  RABL6 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIRABL6 [Mapview hg19]  RABL6 [Mapview hg38]
OMIM610615   
Gene and transcription
Genbank (Entrez)AF318367 AK000963 AK001184 AK023107 AK027586
RefSeq transcript (Entrez)NM_001173988 NM_001173989 NM_017995 NM_024718
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_031950 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)RABL6
Cluster EST : UnigeneHs.370555 [ NCBI ]
CGAP (NCI)Hs.370555
Alternative Splicing GalleryENSG00000196642
Gene ExpressionRABL6 [ NCBI-GEO ]   RABL6 [ EBI - ARRAY_EXPRESS ]   RABL6 [ SEEK ]   RABL6 [ MEM ]
Gene Expression Viewer (FireBrowse)RABL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55684
GTEX Portal (Tissue expression)RABL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3YEC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3YEC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3YEC7
Splice isoforms : SwissVarQ3YEC7
PhosPhoSitePlusQ3YEC7
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RABL6
DMDM Disease mutations55684
Blocks (Seattle)RABL6
SuperfamilyQ3YEC7
Human Protein AtlasENSG00000196642
Peptide AtlasQ3YEC7
HPRD12984
IPIIPI00827972   IPI00827967   IPI00827874   IPI00827825   IPI00186586   IPI00514853   IPI00514888   IPI01009199   IPI00514396   IPI00983976   IPI00984477   
Protein Interaction databases
DIP (DOE-UCLA)Q3YEC7
IntAct (EBI)Q3YEC7
FunCoupENSG00000196642
BioGRIDRABL6
STRING (EMBL)RABL6
ZODIACRABL6
Ontologies - Pathways
QuickGOQ3YEC7
Ontology : AmiGOprotein binding  GTP binding  nucleus  cytoplasm  small GTPase mediated signal transduction  protein transport  
Ontology : EGO-EBIprotein binding  GTP binding  nucleus  cytoplasm  small GTPase mediated signal transduction  protein transport  
NDEx NetworkRABL6
Atlas of Cancer Signalling NetworkRABL6
Wikipedia pathwaysRABL6
Orthology - Evolution
OrthoDB55684
GeneTree (enSembl)ENSG00000196642
Phylogenetic Trees/Animal Genes : TreeFamRABL6
HOVERGENQ3YEC7
HOGENOMQ3YEC7
Homologs : HomoloGeneRABL6
Homology/Alignments : Family Browser (UCSC)RABL6
Gene fusions - Rearrangements
Fusion Cancer (Beijing)KIAA1984 [RABL6]  -  9q34.3 [FUSC001950]  [FUSC001950]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRABL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RABL6
dbVarRABL6
ClinVarRABL6
1000_GenomesRABL6 
Exome Variant ServerRABL6
ExAC (Exome Aggregation Consortium)RABL6 (select the gene name)
Genetic variants : HAPMAP55684
Genomic Variants (DGV)RABL6 [DGVbeta]
DECIPHER (Syndromes)9:139702374-139735639  ENSG00000196642
CONAN: Copy Number AnalysisRABL6 
Mutations
ICGC Data PortalRABL6 
TCGA Data PortalRABL6 
Broad Tumor PortalRABL6
OASIS PortalRABL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRABL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRABL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RABL6
DgiDB (Drug Gene Interaction Database)RABL6
DoCM (Curated mutations)RABL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RABL6 (select a term)
intoGenRABL6
Cancer3DRABL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610615   
Orphanet
MedgenRABL6
Genetic Testing Registry RABL6
NextProtQ3YEC7 [Medical]
TSGene55684
GENETestsRABL6
Huge Navigator RABL6 [HugePedia]
snp3D : Map Gene to Disease55684
BioCentury BCIQRABL6
ClinGenRABL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55684
Chemical/Pharm GKB GenePA134868176
Clinical trialRABL6
Miscellaneous
canSAR (ICR)RABL6 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRABL6
EVEXRABL6
GoPubMedRABL6
iHOPRABL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:09 CET 2017

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