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RAD21L1 (RAD21 cohesin complex component like 1)

Identity

Alias_namesRAD21-like 1 (S. pombe)
Alias_symbol (synonym)dJ545L17.2
RAD21L
Other alias
HGNC (Hugo) RAD21L1
LocusID (NCBI) 642636
Atlas_Id 46660
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 1226120 and ends at 1254501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MALAT1 (11q13.1) / RAD21L1 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAD21L1   16271
Cards
Entrez_Gene (NCBI)RAD21L1  642636  RAD21 cohesin complex component like 1
AliasesRAD21L; dJ545L17.2
GeneCards (Weizmann)RAD21L1
Ensembl hg19 (Hinxton)ENSG00000244588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244588 [Gene_View]  chr20:1226120-1254501 [Contig_View]  RAD21L1 [Vega]
ICGC DataPortalENSG00000244588
TCGA cBioPortalRAD21L1
AceView (NCBI)RAD21L1
Genatlas (Paris)RAD21L1
WikiGenes642636
SOURCE (Princeton)RAD21L1
Genetics Home Reference (NIH)RAD21L1
Genomic and cartography
GoldenPath hg38 (UCSC)RAD21L1  -     chr20:1226120-1254501 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAD21L1  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblRAD21L1 - 20p13 [CytoView hg19]  RAD21L1 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIRAD21L1 [Mapview hg19]  RAD21L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC157891 BC171911 HQ603827
RefSeq transcript (Entrez)NM_001136566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAD21L1
Cluster EST : UnigeneHs.713451 [ NCBI ]
CGAP (NCI)Hs.713451
Alternative Splicing GalleryENSG00000244588
Gene ExpressionRAD21L1 [ NCBI-GEO ]   RAD21L1 [ EBI - ARRAY_EXPRESS ]   RAD21L1 [ SEEK ]   RAD21L1 [ MEM ]
Gene Expression Viewer (FireBrowse)RAD21L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642636
GTEX Portal (Tissue expression)RAD21L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4I0
Splice isoforms : SwissVarQ9H4I0
PhosPhoSitePlusQ9H4I0
Domains : Interpro (EBI)Rad21/Rec8_C    Rad21/Rec8_C_eu    Rad21_Rec8_N    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Rad21_Rec8 (PF04824)    Rad21_Rec8_N (PF04825)   
Domain families : Pfam (NCBI)pfam04824    pfam04825   
Conserved Domain (NCBI)RAD21L1
DMDM Disease mutations642636
Blocks (Seattle)RAD21L1
SuperfamilyQ9H4I0
Human Protein AtlasENSG00000244588
Peptide AtlasQ9H4I0
IPIIPI00916789   IPI00878979   IPI00918024   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4I0
IntAct (EBI)Q9H4I0
FunCoupENSG00000244588
BioGRIDRAD21L1
STRING (EMBL)RAD21L1
ZODIACRAD21L1
Ontologies - Pathways
QuickGOQ9H4I0
Ontology : AmiGOdouble-strand break repair via homologous recombination  nuclear cohesin complex  lateral element  chromatin binding  nucleus  chromosome  double-strand break repair  sister chromatid cohesion  synaptonemal complex assembly  spermatogenesis  fertilization  meiotic cohesin complex  nuclear meiotic cohesin complex  meiotic attachment of telomere to nuclear envelope  seminiferous tubule development  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  nuclear cohesin complex  lateral element  chromatin binding  nucleus  chromosome  double-strand break repair  sister chromatid cohesion  synaptonemal complex assembly  spermatogenesis  fertilization  meiotic cohesin complex  nuclear meiotic cohesin complex  meiotic attachment of telomere to nuclear envelope  seminiferous tubule development  
NDEx NetworkRAD21L1
Atlas of Cancer Signalling NetworkRAD21L1
Wikipedia pathwaysRAD21L1
Orthology - Evolution
OrthoDB642636
GeneTree (enSembl)ENSG00000244588
Phylogenetic Trees/Animal Genes : TreeFamRAD21L1
HOVERGENQ9H4I0
HOGENOMQ9H4I0
Homologs : HomoloGeneRAD21L1
Homology/Alignments : Family Browser (UCSC)RAD21L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAD21L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAD21L1
dbVarRAD21L1
ClinVarRAD21L1
1000_GenomesRAD21L1 
Exome Variant ServerRAD21L1
ExAC (Exome Aggregation Consortium)RAD21L1 (select the gene name)
Genetic variants : HAPMAP642636
Genomic Variants (DGV)RAD21L1 [DGVbeta]
DECIPHERRAD21L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAD21L1 
Mutations
ICGC Data PortalRAD21L1 
TCGA Data PortalRAD21L1 
Broad Tumor PortalRAD21L1
OASIS PortalRAD21L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAD21L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAD21L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAD21L1
DgiDB (Drug Gene Interaction Database)RAD21L1
DoCM (Curated mutations)RAD21L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAD21L1 (select a term)
intoGenRAD21L1
Cancer3DRAD21L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAD21L1
Genetic Testing Registry RAD21L1
NextProtQ9H4I0 [Medical]
TSGene642636
GENETestsRAD21L1
Target ValidationRAD21L1
Huge Navigator RAD21L1 [HugePedia]
snp3D : Map Gene to Disease642636
BioCentury BCIQRAD21L1
ClinGenRAD21L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642636
Chemical/Pharm GKB GenePA34171
Clinical trialRAD21L1
Miscellaneous
canSAR (ICR)RAD21L1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAD21L1
EVEXRAD21L1
GoPubMedRAD21L1
iHOPRAD21L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:27:51 CEST 2017

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