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RAD23B (RAD23 homolog B, nucleotide excision repair protein)

Identity

Alias_namesRAD23 (S. cerevisiae) homolog B
RAD23 homolog B (S. cerevisiae)
Alias_symbol (synonym)HHR23B
P58
HR23B
Other alias
HGNC (Hugo) RAD23B
LocusID (NCBI) 5887
Atlas_Id 42028
Location 9q31.2  [Link to chromosome band 9q31]
Location_base_pair Starts at 110047050 and ends at 110094475 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BCAR3 (1p22.1) / RAD23B (9q31.2)EIF5A2 (3q26.2) / RAD23B (9q31.2)RAD23B (9q31.2) / GSN (9q33.2)
RAD23B (9q31.2) / LOC344887 (3q27.2)RAD23B (9q31.2) / MSMO1 (4q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAD23B   9813
Cards
Entrez_Gene (NCBI)RAD23B  5887  RAD23 homolog B, nucleotide excision repair protein
AliasesHHR23B; HR23B; P58
GeneCards (Weizmann)RAD23B
Ensembl hg19 (Hinxton)ENSG00000119318 [Gene_View]  chr9:110047050-110094475 [Contig_View]  RAD23B [Vega]
Ensembl hg38 (Hinxton)ENSG00000119318 [Gene_View]  chr9:110047050-110094475 [Contig_View]  RAD23B [Vega]
ICGC DataPortalENSG00000119318
TCGA cBioPortalRAD23B
AceView (NCBI)RAD23B
Genatlas (Paris)RAD23B
WikiGenes5887
SOURCE (Princeton)RAD23B
Genetics Home Reference (NIH)RAD23B
Genomic and cartography
GoldenPath hg19 (UCSC)RAD23B  -     chr9:110047050-110094475 +  9q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAD23B  -     9q31.2   [Description]    (hg38-Dec_2013)
EnsemblRAD23B - 9q31.2 [CytoView hg19]  RAD23B - 9q31.2 [CytoView hg38]
Mapping of homologs : NCBIRAD23B [Mapview hg19]  RAD23B [Mapview hg38]
OMIM600062   
Gene and transcription
Genbank (Entrez)AI285544 AI375313 AK125226 AK223479 AK293532
RefSeq transcript (Entrez)NM_001244713 NM_001244724 NM_002874
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)RAD23B
Cluster EST : UnigeneHs.521640 [ NCBI ]
CGAP (NCI)Hs.521640
Alternative Splicing GalleryENSG00000119318
Gene ExpressionRAD23B [ NCBI-GEO ]   RAD23B [ EBI - ARRAY_EXPRESS ]   RAD23B [ SEEK ]   RAD23B [ MEM ]
Gene Expression Viewer (FireBrowse)RAD23B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5887
GTEX Portal (Tissue expression)RAD23B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54727   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54727  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54727
Splice isoforms : SwissVarP54727
PhosPhoSitePlusP54727
Domaine pattern : Prosite (Expaxy)UBA (PS50030)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Rad23    STI1_HS-bd    UBA    UBA-like    Ubiquitin-rel_dom    Ubiquitin_dom    XPC-bd   
Domain families : Pfam (Sanger)UBA (PF00627)    ubiquitin (PF00240)    XPC-binding (PF09280)   
Domain families : Pfam (NCBI)pfam00627    pfam00240    pfam09280   
Domain families : Smart (EMBL)STI1 (SM00727)  UBA (SM00165)  UBQ (SM00213)  
Conserved Domain (NCBI)RAD23B
DMDM Disease mutations5887
Blocks (Seattle)RAD23B
PDB (SRS)1P1A    1PVE    1UEL   
PDB (PDBSum)1P1A    1PVE    1UEL   
PDB (IMB)1P1A    1PVE    1UEL   
PDB (RSDB)1P1A    1PVE    1UEL   
Structural Biology KnowledgeBase1P1A    1PVE    1UEL   
SCOP (Structural Classification of Proteins)1P1A    1PVE    1UEL   
CATH (Classification of proteins structures)1P1A    1PVE    1UEL   
SuperfamilyP54727
Human Protein AtlasENSG00000119318
Peptide AtlasP54727
HPRD06772
IPIIPI00008223   IPI00642549   IPI00479614   IPI01009205   IPI00643078   
Protein Interaction databases
DIP (DOE-UCLA)P54727
IntAct (EBI)P54727
FunCoupENSG00000119318
BioGRIDRAD23B
STRING (EMBL)RAD23B
ZODIACRAD23B
Ontologies - Pathways
QuickGOP54727
Ontology : AmiGOproteasome complex  nucleotide-excision repair, DNA damage recognition  nucleotide-excision repair, DNA damage recognition  nucleotide-excision repair, DNA duplex unwinding  damaged DNA binding  single-stranded DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  nucleotide-excision repair  nucleotide-excision repair, preincision complex assembly  spermatogenesis  polyubiquitin binding  regulation of proteasomal ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  embryonic organ development  global genome nucleotide-excision repair  XPC complex  
Ontology : EGO-EBIproteasome complex  nucleotide-excision repair, DNA damage recognition  nucleotide-excision repair, DNA damage recognition  nucleotide-excision repair, DNA duplex unwinding  damaged DNA binding  single-stranded DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  nucleotide-excision repair  nucleotide-excision repair, preincision complex assembly  spermatogenesis  polyubiquitin binding  regulation of proteasomal ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  embryonic organ development  global genome nucleotide-excision repair  XPC complex  
Pathways : KEGGNucleotide excision repair    Protein processing in endoplasmic reticulum   
NDEx NetworkRAD23B
Atlas of Cancer Signalling NetworkRAD23B
Wikipedia pathwaysRAD23B
Orthology - Evolution
OrthoDB5887
GeneTree (enSembl)ENSG00000119318
Phylogenetic Trees/Animal Genes : TreeFamRAD23B
HOVERGENP54727
HOGENOMP54727
Homologs : HomoloGeneRAD23B
Homology/Alignments : Family Browser (UCSC)RAD23B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAD23B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAD23B
dbVarRAD23B
ClinVarRAD23B
1000_GenomesRAD23B 
Exome Variant ServerRAD23B
ExAC (Exome Aggregation Consortium)RAD23B (select the gene name)
Genetic variants : HAPMAP5887
Genomic Variants (DGV)RAD23B [DGVbeta]
DECIPHER (Syndromes)9:110047050-110094475  ENSG00000119318
CONAN: Copy Number AnalysisRAD23B 
Mutations
ICGC Data PortalRAD23B 
TCGA Data PortalRAD23B 
Broad Tumor PortalRAD23B
OASIS PortalRAD23B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAD23B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAD23B
intOGen PortalRAD23B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAD23B
DgiDB (Drug Gene Interaction Database)RAD23B
DoCM (Curated mutations)RAD23B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAD23B (select a term)
intoGenRAD23B
Cancer3DRAD23B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600062   
Orphanet
MedgenRAD23B
Genetic Testing Registry RAD23B
NextProtP54727 [Medical]
TSGene5887
GENETestsRAD23B
Huge Navigator RAD23B [HugePedia]
snp3D : Map Gene to Disease5887
BioCentury BCIQRAD23B
ClinGenRAD23B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5887
Chemical/Pharm GKB GenePA34173
Clinical trialRAD23B
Miscellaneous
canSAR (ICR)RAD23B (select the gene name)
Probes
Litterature
PubMed126 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAD23B
EVEXRAD23B
GoPubMedRAD23B
iHOPRAD23B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:11 CET 2017

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