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RAD51AP1 (RAD51 associated protein 1)

Identity

Alias_symbol (synonym)PIR51
Other alias
HGNC (Hugo) RAD51AP1
LocusID (NCBI) 10635
Atlas_Id 41723
Location 12p13.32  [Link to chromosome band 12p13]
Location_base_pair Starts at 4538784 and ends at 4560047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LINC00476 (9q22.32) / RAD51AP1 (12p13.32)PHF20L1 (8q24.22) / RAD51AP1 (12p13.32)RAD51AP1 (12p13.32) / SLCO1C1 (12p12.2)
RAD51AP1 (12p13.32) / ST8SIA1 (12p12.1)RAD51AP1 12p13.32 / SLCO1C1 12p12.2RAD51AP1 12p13.32 / ST8SIA1 12p12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAD51AP1   16956
Cards
Entrez_Gene (NCBI)RAD51AP1  10635  RAD51 associated protein 1
AliasesPIR51
GeneCards (Weizmann)RAD51AP1
Ensembl hg19 (Hinxton)ENSG00000111247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111247 [Gene_View]  chr12:4538784-4560047 [Contig_View]  RAD51AP1 [Vega]
ICGC DataPortalENSG00000111247
TCGA cBioPortalRAD51AP1
AceView (NCBI)RAD51AP1
Genatlas (Paris)RAD51AP1
WikiGenes10635
SOURCE (Princeton)RAD51AP1
Genetics Home Reference (NIH)RAD51AP1
Genomic and cartography
GoldenPath hg38 (UCSC)RAD51AP1  -     chr12:4538784-4560047 +  12p13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAD51AP1  -     12p13.32   [Description]    (hg19-Feb_2009)
EnsemblRAD51AP1 - 12p13.32 [CytoView hg19]  RAD51AP1 - 12p13.32 [CytoView hg38]
Mapping of homologs : NCBIRAD51AP1 [Mapview hg19]  RAD51AP1 [Mapview hg38]
OMIM603070   
Gene and transcription
Genbank (Entrez)AF006259 AK096930 AK290428 AK291948 AK300773
RefSeq transcript (Entrez)NM_001130862 NM_006479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAD51AP1
Cluster EST : UnigeneHs.730696 [ NCBI ]
CGAP (NCI)Hs.730696
Alternative Splicing GalleryENSG00000111247
Gene ExpressionRAD51AP1 [ NCBI-GEO ]   RAD51AP1 [ EBI - ARRAY_EXPRESS ]   RAD51AP1 [ SEEK ]   RAD51AP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RAD51AP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10635
GTEX Portal (Tissue expression)RAD51AP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B01
Splice isoforms : SwissVarQ96B01
PhosPhoSitePlusQ96B01
Domains : Interpro (EBI)RAD51-assoc_prot_1    RAD51_interact   
Domain families : Pfam (Sanger)RAD51_interact (PF15696)   
Domain families : Pfam (NCBI)pfam15696   
Conserved Domain (NCBI)RAD51AP1
DMDM Disease mutations10635
Blocks (Seattle)RAD51AP1
SuperfamilyQ96B01
Human Protein AtlasENSG00000111247
Peptide AtlasQ96B01
IPIIPI00093253   IPI00396551   IPI00607574   IPI00908475   IPI01011136   IPI01014136   IPI01012800   IPI01014172   IPI01012529   
Protein Interaction databases
DIP (DOE-UCLA)Q96B01
IntAct (EBI)Q96B01
FunCoupENSG00000111247
BioGRIDRAD51AP1
STRING (EMBL)RAD51AP1
ZODIACRAD51AP1
Ontologies - Pathways
QuickGOQ96B01
Ontology : AmiGOdouble-strand break repair via homologous recombination  double-strand break repair via homologous recombination  DNA synthesis involved in DNA repair  strand displacement  nuclear chromatin  double-stranded DNA binding  single-stranded DNA binding  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  DNA repair  regulation of double-strand break repair via homologous recombination  interstrand cross-link repair  cellular response to ionizing radiation  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  double-strand break repair via homologous recombination  DNA synthesis involved in DNA repair  strand displacement  nuclear chromatin  double-stranded DNA binding  single-stranded DNA binding  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  DNA repair  regulation of double-strand break repair via homologous recombination  interstrand cross-link repair  cellular response to ionizing radiation  
NDEx NetworkRAD51AP1
Atlas of Cancer Signalling NetworkRAD51AP1
Wikipedia pathwaysRAD51AP1
Orthology - Evolution
OrthoDB10635
GeneTree (enSembl)ENSG00000111247
Phylogenetic Trees/Animal Genes : TreeFamRAD51AP1
HOVERGENQ96B01
HOGENOMQ96B01
Homologs : HomoloGeneRAD51AP1
Homology/Alignments : Family Browser (UCSC)RAD51AP1
Gene fusions - Rearrangements
Fusion : MitelmanRAD51AP1/SLCO1C1 [12p13.32/12p12.2]  
Fusion : MitelmanRAD51AP1/ST8SIA1 [12p13.32/12p12.1]  [t(12;12)(p12;p13)]  
Fusion: TCGARAD51AP1 12p13.32 SLCO1C1 12p12.2 LUSC
Fusion: TCGARAD51AP1 12p13.32 ST8SIA1 12p12.1 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAD51AP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAD51AP1
dbVarRAD51AP1
ClinVarRAD51AP1
1000_GenomesRAD51AP1 
Exome Variant ServerRAD51AP1
ExAC (Exome Aggregation Consortium)RAD51AP1 (select the gene name)
Genetic variants : HAPMAP10635
Genomic Variants (DGV)RAD51AP1 [DGVbeta]
DECIPHERRAD51AP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAD51AP1 
Mutations
ICGC Data PortalRAD51AP1 
TCGA Data PortalRAD51AP1 
Broad Tumor PortalRAD51AP1
OASIS PortalRAD51AP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAD51AP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAD51AP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAD51AP1
DgiDB (Drug Gene Interaction Database)RAD51AP1
DoCM (Curated mutations)RAD51AP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAD51AP1 (select a term)
intoGenRAD51AP1
Cancer3DRAD51AP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603070   
Orphanet
MedgenRAD51AP1
Genetic Testing Registry RAD51AP1
NextProtQ96B01 [Medical]
TSGene10635
GENETestsRAD51AP1
Target ValidationRAD51AP1
Huge Navigator RAD51AP1 [HugePedia]
snp3D : Map Gene to Disease10635
BioCentury BCIQRAD51AP1
ClinGenRAD51AP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10635
Chemical/Pharm GKB GenePA134871784
Clinical trialRAD51AP1
Miscellaneous
canSAR (ICR)RAD51AP1 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAD51AP1
EVEXRAD51AP1
GoPubMedRAD51AP1
iHOPRAD51AP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:27:53 CEST 2017

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