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RAD9B (RAD9 checkpoint clamp component B)

Identity

Alias_namesRAD9 homolog B (S. pombe)
Alias_symbol (synonym)FLJ40346
Other alias-
HGNC (Hugo) RAD9B
LocusID (NCBI) 144715
Atlas_Id 42922
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 110502200 and ends at 110532086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAD9B (12q24.11) / B2M (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAD9B   21700
Cards
Entrez_Gene (NCBI)RAD9B  144715  RAD9 checkpoint clamp component B
Aliases
GeneCards (Weizmann)RAD9B
Ensembl hg19 (Hinxton)ENSG00000151164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151164 [Gene_View]  chr12:110502200-110532086 [Contig_View]  RAD9B [Vega]
ICGC DataPortalENSG00000151164
TCGA cBioPortalRAD9B
AceView (NCBI)RAD9B
Genatlas (Paris)RAD9B
WikiGenes144715
SOURCE (Princeton)RAD9B
Genetics Home Reference (NIH)RAD9B
Genomic and cartography
GoldenPath hg38 (UCSC)RAD9B  -     chr12:110502200-110532086 +  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAD9B  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblRAD9B - 12q24.11 [CytoView hg19]  RAD9B - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIRAD9B [Mapview hg19]  RAD9B [Mapview hg38]
OMIM608368   
Gene and transcription
Genbank (Entrez)AK058176 AK097665 AK124109 AK301826 AK302512
RefSeq transcript (Entrez)NM_001286531 NM_001286532 NM_001286533 NM_001286534 NM_001286535 NM_001286536 NM_152442
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAD9B
Cluster EST : UnigeneHs.97794 [ NCBI ]
CGAP (NCI)Hs.97794
Alternative Splicing GalleryENSG00000151164
Gene ExpressionRAD9B [ NCBI-GEO ]   RAD9B [ EBI - ARRAY_EXPRESS ]   RAD9B [ SEEK ]   RAD9B [ MEM ]
Gene Expression Viewer (FireBrowse)RAD9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144715
GTEX Portal (Tissue expression)RAD9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6WBX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6WBX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6WBX8
Splice isoforms : SwissVarQ6WBX8
PhosPhoSitePlusQ6WBX8
Domains : Interpro (EBI)Rad9    Rad9/Ddc1   
Domain families : Pfam (Sanger)Rad9 (PF04139)   
Domain families : Pfam (NCBI)pfam04139   
Conserved Domain (NCBI)RAD9B
DMDM Disease mutations144715
Blocks (Seattle)RAD9B
SuperfamilyQ6WBX8
Human Protein AtlasENSG00000151164
Peptide AtlasQ6WBX8
IPIIPI00479102   IPI00735823   IPI00737901   IPI01026422   IPI00807687   IPI00418969   IPI00917603   IPI00916265   
Protein Interaction databases
DIP (DOE-UCLA)Q6WBX8
IntAct (EBI)Q6WBX8
FunCoupENSG00000151164
BioGRIDRAD9B
STRING (EMBL)RAD9B
ZODIACRAD9B
Ontologies - Pathways
QuickGOQ6WBX8
Ontology : AmiGODNA replication checkpoint  protein binding  nucleoplasm  DNA replication  DNA repair  3'-5' exonuclease activity  checkpoint clamp complex  intra-S DNA damage checkpoint  cellular response to ionizing radiation  nucleic acid phosphodiester bond hydrolysis  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIDNA replication checkpoint  protein binding  nucleoplasm  DNA replication  DNA repair  3'-5' exonuclease activity  checkpoint clamp complex  intra-S DNA damage checkpoint  cellular response to ionizing radiation  nucleic acid phosphodiester bond hydrolysis  regulation of signal transduction by p53 class mediator  
NDEx NetworkRAD9B
Atlas of Cancer Signalling NetworkRAD9B
Wikipedia pathwaysRAD9B
Orthology - Evolution
OrthoDB144715
GeneTree (enSembl)ENSG00000151164
Phylogenetic Trees/Animal Genes : TreeFamRAD9B
HOVERGENQ6WBX8
HOGENOMQ6WBX8
Homologs : HomoloGeneRAD9B
Homology/Alignments : Family Browser (UCSC)RAD9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAD9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAD9B
dbVarRAD9B
ClinVarRAD9B
1000_GenomesRAD9B 
Exome Variant ServerRAD9B
ExAC (Exome Aggregation Consortium)RAD9B (select the gene name)
Genetic variants : HAPMAP144715
Genomic Variants (DGV)RAD9B [DGVbeta]
DECIPHERRAD9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAD9B 
Mutations
ICGC Data PortalRAD9B 
TCGA Data PortalRAD9B 
Broad Tumor PortalRAD9B
OASIS PortalRAD9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAD9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAD9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAD9B
DgiDB (Drug Gene Interaction Database)RAD9B
DoCM (Curated mutations)RAD9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAD9B (select a term)
intoGenRAD9B
Cancer3DRAD9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608368   
Orphanet
MedgenRAD9B
Genetic Testing Registry RAD9B
NextProtQ6WBX8 [Medical]
TSGene144715
GENETestsRAD9B
Target ValidationRAD9B
Huge Navigator RAD9B [HugePedia]
snp3D : Map Gene to Disease144715
BioCentury BCIQRAD9B
ClinGenRAD9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144715
Chemical/Pharm GKB GenePA134889252
Clinical trialRAD9B
Miscellaneous
canSAR (ICR)RAD9B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAD9B
EVEXRAD9B
GoPubMedRAD9B
iHOPRAD9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:52:24 CEST 2017

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