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RAET1E (retinoic acid early transcript 1E)

Identity

Alias_symbol (synonym)LETAL
bA350J20.7
ULBP4
Other aliasN2DL-4
NKG2DL4
RAET1E2
RL-4
HGNC (Hugo) RAET1E
LocusID (NCBI) 135250
Atlas_Id 49737
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 150209601 and ends at 150212170 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAET1E   16793
Cards
Entrez_Gene (NCBI)RAET1E  135250  retinoic acid early transcript 1E
AliasesLETAL; N2DL-4; NKG2DL4; RAET1E2; 
RL-4; ULBP4; bA350J20.7
GeneCards (Weizmann)RAET1E
Ensembl hg19 (Hinxton)ENSG00000164520 [Gene_View]  chr6:150209601-150212170 [Contig_View]  RAET1E [Vega]
Ensembl hg38 (Hinxton)ENSG00000164520 [Gene_View]  chr6:150209601-150212170 [Contig_View]  RAET1E [Vega]
ICGC DataPortalENSG00000164520
TCGA cBioPortalRAET1E
AceView (NCBI)RAET1E
Genatlas (Paris)RAET1E
WikiGenes135250
SOURCE (Princeton)RAET1E
Genetics Home Reference (NIH)RAET1E
Genomic and cartography
GoldenPath hg19 (UCSC)RAET1E  -     chr6:150209601-150212170 -  6q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAET1E  -     6q25.1   [Description]    (hg38-Dec_2013)
EnsemblRAET1E - 6q25.1 [CytoView hg19]  RAET1E - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBIRAET1E [Mapview hg19]  RAET1E [Mapview hg38]
OMIM609243   
Gene and transcription
Genbank (Entrez)AF359243 AY054974 AY069961 AY176317 AY252119
RefSeq transcript (Entrez)NM_001243325 NM_001243327 NM_001243328 NM_139165
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_029833 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)RAET1E
Cluster EST : UnigeneHs.511818 [ NCBI ]
CGAP (NCI)Hs.511818
Alternative Splicing GalleryENSG00000164520
Gene ExpressionRAET1E [ NCBI-GEO ]   RAET1E [ EBI - ARRAY_EXPRESS ]   RAET1E [ SEEK ]   RAET1E [ MEM ]
Gene Expression Viewer (FireBrowse)RAET1E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135250
GTEX Portal (Tissue expression)RAET1E
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD07
Splice isoforms : SwissVarQ8TD07
PhosPhoSitePlusQ8TD07
Domains : Interpro (EBI)MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog    MHC_I_a_a1/a2   
Domain families : Pfam (Sanger)MHC_I (PF00129)   
Domain families : Pfam (NCBI)pfam00129   
Conserved Domain (NCBI)RAET1E
DMDM Disease mutations135250
Blocks (Seattle)RAET1E
SuperfamilyQ8TD07
Human Protein AtlasENSG00000164520
Peptide AtlasQ8TD07
HPRD16466
IPIIPI00154722   IPI00411858   IPI00411860   IPI00651626   IPI00976692   IPI00977276   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD07
IntAct (EBI)Q8TD07
FunCoupENSG00000164520
BioGRIDRAET1E
STRING (EMBL)RAET1E
ZODIACRAET1E
Ontologies - Pathways
QuickGOQ8TD07
Ontology : AmiGOT cell mediated cytotoxicity  antigen binding  extracellular region  plasma membrane  plasma membrane  plasma membrane  integral component of membrane  antigen processing and presentation  natural killer cell mediated cytotoxicity  natural killer cell lectin-like receptor binding  regulation of immune response  
Ontology : EGO-EBIT cell mediated cytotoxicity  antigen binding  extracellular region  plasma membrane  plasma membrane  plasma membrane  integral component of membrane  antigen processing and presentation  natural killer cell mediated cytotoxicity  natural killer cell lectin-like receptor binding  regulation of immune response  
Pathways : KEGGNatural killer cell mediated cytotoxicity   
NDEx NetworkRAET1E
Atlas of Cancer Signalling NetworkRAET1E
Wikipedia pathwaysRAET1E
Orthology - Evolution
OrthoDB135250
GeneTree (enSembl)ENSG00000164520
Phylogenetic Trees/Animal Genes : TreeFamRAET1E
HOVERGENQ8TD07
HOGENOMQ8TD07
Homologs : HomoloGeneRAET1E
Homology/Alignments : Family Browser (UCSC)RAET1E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAET1E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAET1E
dbVarRAET1E
ClinVarRAET1E
1000_GenomesRAET1E 
Exome Variant ServerRAET1E
ExAC (Exome Aggregation Consortium)RAET1E (select the gene name)
Genetic variants : HAPMAP135250
Genomic Variants (DGV)RAET1E [DGVbeta]
DECIPHER (Syndromes)6:150209601-150212170  ENSG00000164520
CONAN: Copy Number AnalysisRAET1E 
Mutations
ICGC Data PortalRAET1E 
TCGA Data PortalRAET1E 
Broad Tumor PortalRAET1E
OASIS PortalRAET1E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAET1E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAET1E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAET1E
DgiDB (Drug Gene Interaction Database)RAET1E
DoCM (Curated mutations)RAET1E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAET1E (select a term)
intoGenRAET1E
Cancer3DRAET1E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609243   
Orphanet
MedgenRAET1E
Genetic Testing Registry RAET1E
NextProtQ8TD07 [Medical]
TSGene135250
GENETestsRAET1E
Huge Navigator RAET1E [HugePedia]
snp3D : Map Gene to Disease135250
BioCentury BCIQRAET1E
ClinGenRAET1E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135250
Chemical/Pharm GKB GenePA134913788
Clinical trialRAET1E
Miscellaneous
canSAR (ICR)RAET1E (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAET1E
EVEXRAET1E
GoPubMedRAET1E
iHOPRAET1E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:46 CEST 2017

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