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RAET1G (retinoic acid early transcript 1G)

Identity

Alias_namesretinoic acid early transcript 1G pseudogene
Alias_symbol (synonym)ULBP5
Other alias
HGNC (Hugo) RAET1G
LocusID (NCBI) 353091
Atlas_Id 55317
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 149916878 and ends at 149923152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAET1G   16795
Cards
Entrez_Gene (NCBI)RAET1G  353091  retinoic acid early transcript 1G
AliasesULBP5
GeneCards (Weizmann)RAET1G
Ensembl hg19 (Hinxton)ENSG00000203722 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203722 [Gene_View]  ENSG00000203722 [Sequence]  chr6:149916878-149923152 [Contig_View]  RAET1G [Vega]
ICGC DataPortalENSG00000203722
TCGA cBioPortalRAET1G
AceView (NCBI)RAET1G
Genatlas (Paris)RAET1G
WikiGenes353091
SOURCE (Princeton)RAET1G
Genetics Home Reference (NIH)RAET1G
Genomic and cartography
GoldenPath hg38 (UCSC)RAET1G  -     chr6:149916878-149923152 -  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAET1G  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblRAET1G - 6q25.1 [CytoView hg19]  RAET1G - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBIRAET1G [Mapview hg19]  RAET1G [Mapview hg38]
OMIM609244   
Gene and transcription
Genbank (Entrez)AK091263 AK310157 AY172579 AY172580 BC096719
RefSeq transcript (Entrez)NM_001001788
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAET1G
Cluster EST : UnigeneHs.558792 [ NCBI ]
CGAP (NCI)Hs.558792
Alternative Splicing GalleryENSG00000203722
Gene ExpressionRAET1G [ NCBI-GEO ]   RAET1G [ EBI - ARRAY_EXPRESS ]   RAET1G [ SEEK ]   RAET1G [ MEM ]
Gene Expression Viewer (FireBrowse)RAET1G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353091
GTEX Portal (Tissue expression)RAET1G
Human Protein AtlasENSG00000203722-RAET1G [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6H3X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6H3X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6H3X3
Splice isoforms : SwissVarQ6H3X3
PhosPhoSitePlusQ6H3X3
Domains : Interpro (EBI)MHC_I-like_Ag-recog    MHC_I-like_Ag-recog_sf    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)MHC_I (PF00129)   
Domain families : Pfam (NCBI)pfam00129   
Conserved Domain (NCBI)RAET1G
DMDM Disease mutations353091
Blocks (Seattle)RAET1G
SuperfamilyQ6H3X3
Human Protein Atlas [tissue]ENSG00000203722-RAET1G [tissue]
Peptide AtlasQ6H3X3
HPRD16467
IPIIPI00433027   IPI00477175   IPI00947475   
Protein Interaction databases
DIP (DOE-UCLA)Q6H3X3
IntAct (EBI)Q6H3X3
FunCoupENSG00000203722
BioGRIDRAET1G
STRING (EMBL)RAET1G
ZODIACRAET1G
Ontologies - Pathways
QuickGOQ6H3X3
Ontology : AmiGOT cell mediated cytotoxicity  positive regulation of natural killer cell cytokine production  protein binding  extracellular region  endoplasmic reticulum  plasma membrane  plasma membrane  plasma membrane  immune response  integral component of membrane  viral process  natural killer cell activation  anchored component of membrane  natural killer cell mediated cytotoxicity  natural killer cell mediated cytotoxicity  susceptibility to natural killer cell mediated cytotoxicity  natural killer cell lectin-like receptor binding  natural killer cell lectin-like receptor binding  
Ontology : EGO-EBIT cell mediated cytotoxicity  positive regulation of natural killer cell cytokine production  protein binding  extracellular region  endoplasmic reticulum  plasma membrane  plasma membrane  plasma membrane  immune response  integral component of membrane  viral process  natural killer cell activation  anchored component of membrane  natural killer cell mediated cytotoxicity  natural killer cell mediated cytotoxicity  susceptibility to natural killer cell mediated cytotoxicity  natural killer cell lectin-like receptor binding  natural killer cell lectin-like receptor binding  
Pathways : KEGGNatural killer cell mediated cytotoxicity   
NDEx NetworkRAET1G
Atlas of Cancer Signalling NetworkRAET1G
Wikipedia pathwaysRAET1G
Orthology - Evolution
OrthoDB353091
GeneTree (enSembl)ENSG00000203722
Phylogenetic Trees/Animal Genes : TreeFamRAET1G
HOVERGENQ6H3X3
HOGENOMQ6H3X3
Homologs : HomoloGeneRAET1G
Homology/Alignments : Family Browser (UCSC)RAET1G
Gene fusions - Rearrangements
Fusion : QuiverRAET1G
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAET1G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAET1G
dbVarRAET1G
ClinVarRAET1G
1000_GenomesRAET1G 
Exome Variant ServerRAET1G
ExAC (Exome Aggregation Consortium)ENSG00000203722
GNOMAD BrowserENSG00000203722
Varsome BrowserRAET1G
Genetic variants : HAPMAP353091
Genomic Variants (DGV)RAET1G [DGVbeta]
DECIPHERRAET1G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAET1G 
Mutations
ICGC Data PortalRAET1G 
TCGA Data PortalRAET1G 
Broad Tumor PortalRAET1G
OASIS PortalRAET1G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAET1G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAET1G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAET1G
DgiDB (Drug Gene Interaction Database)RAET1G
DoCM (Curated mutations)RAET1G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAET1G (select a term)
intoGenRAET1G
Cancer3DRAET1G(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609244   
Orphanet
DisGeNETRAET1G
MedgenRAET1G
Genetic Testing Registry RAET1G
NextProtQ6H3X3 [Medical]
TSGene353091
GENETestsRAET1G
Target ValidationRAET1G
Huge Navigator RAET1G [HugePedia]
snp3D : Map Gene to Disease353091
BioCentury BCIQRAET1G
ClinGenRAET1G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353091
Chemical/Pharm GKB GenePA134897742
Clinical trialRAET1G
Miscellaneous
canSAR (ICR)RAET1G (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAET1G
EVEXRAET1G
GoPubMedRAET1G
iHOPRAET1G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:34:18 CET 2018

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