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RAET1K (retinoic acid early transcript 1K pseudogene)

Identity

Other alias-
HGNC (Hugo) RAET1K
LocusID (NCBI) 646024
Atlas_Id 72471
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 149998019 and ends at 150005144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAET1K   16797
Cards
Entrez_Gene (NCBI)RAET1K  646024  retinoic acid early transcript 1K pseudogene
Aliases
GeneCards (Weizmann)RAET1K
Ensembl hg19 (Hinxton)ENSG00000218358 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000218358 [Gene_View]  ENSG00000218358 [Sequence]  chr6:149998019-150005144 [Contig_View]  RAET1K [Vega]
ICGC DataPortalENSG00000218358
TCGA cBioPortalRAET1K
AceView (NCBI)RAET1K
Genatlas (Paris)RAET1K
WikiGenes646024
SOURCE (Princeton)RAET1K
Genetics Home Reference (NIH)RAET1K
Genomic and cartography
GoldenPath hg38 (UCSC)RAET1K  -     chr6:149998019-150005144 -  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAET1K  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblRAET1K - 6q25.1 [CytoView hg19]  RAET1K - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBIRAET1K [Mapview hg19]  RAET1K [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF425244
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAET1K
Cluster EST : UnigeneHs.560537 [ NCBI ]
CGAP (NCI)Hs.560537
Alternative Splicing GalleryENSG00000218358
Gene ExpressionRAET1K [ NCBI-GEO ]   RAET1K [ EBI - ARRAY_EXPRESS ]   RAET1K [ SEEK ]   RAET1K [ MEM ]
Gene Expression Viewer (FireBrowse)RAET1K [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)646024
GTEX Portal (Tissue expression)RAET1K
Human Protein AtlasENSG00000218358-RAET1K [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RAET1K
DMDM Disease mutations646024
Blocks (Seattle)RAET1K
Human Protein Atlas [tissue]ENSG00000218358-RAET1K [tissue]
Protein Interaction databases
FunCoupENSG00000218358
BioGRIDRAET1K
STRING (EMBL)RAET1K
ZODIACRAET1K
Ontologies - Pathways
Huge Navigator RAET1K [HugePedia]
snp3D : Map Gene to Disease646024
BioCentury BCIQRAET1K
ClinGenRAET1K
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646024
Chemical/Pharm GKB GenePA134879019
Clinical trialRAET1K
Miscellaneous
canSAR (ICR)RAET1K (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAET1K
EVEXRAET1K
GoPubMedRAET1K
iHOPRAET1K
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:25:55 CEST 2018

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