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RAET1L (retinoic acid early transcript 1L)

Identity

Other aliasULBP6
HGNC (Hugo) RAET1L
LocusID (NCBI) 154064
Atlas_Id 55312
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 150020130 and ends at 150025532 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAET1L   16798
Cards
Entrez_Gene (NCBI)RAET1L  154064  retinoic acid early transcript 1L
AliasesULBP6
GeneCards (Weizmann)RAET1L
Ensembl hg19 (Hinxton)ENSG00000155918 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155918 [Gene_View]  ENSG00000155918 [Sequence]  chr6:150020130-150025532 [Contig_View]  RAET1L [Vega]
ICGC DataPortalENSG00000155918
TCGA cBioPortalRAET1L
AceView (NCBI)RAET1L
Genatlas (Paris)RAET1L
WikiGenes154064
SOURCE (Princeton)RAET1L
Genetics Home Reference (NIH)RAET1L
Genomic and cartography
GoldenPath hg38 (UCSC)RAET1L  -     chr6:150020130-150025532 -  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAET1L  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblRAET1L - 6q25.1 [CytoView hg19]  RAET1L - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBIRAET1L [Mapview hg19]  RAET1L [Mapview hg38]
OMIM611047   
Gene and transcription
Genbank (Entrez)AY039682 BC131600 DA442768
RefSeq transcript (Entrez)NM_130900
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAET1L
Cluster EST : UnigeneHs.558659 [ NCBI ]
CGAP (NCI)Hs.558659
Alternative Splicing GalleryENSG00000155918
Gene ExpressionRAET1L [ NCBI-GEO ]   RAET1L [ EBI - ARRAY_EXPRESS ]   RAET1L [ SEEK ]   RAET1L [ MEM ]
Gene Expression Viewer (FireBrowse)RAET1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154064
GTEX Portal (Tissue expression)RAET1L
Human Protein AtlasENSG00000155918-RAET1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VY80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VY80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VY80
Splice isoforms : SwissVarQ5VY80
PhosPhoSitePlusQ5VY80
Domains : Interpro (EBI)MHC_I-like_Ag-recog    MHC_I-like_Ag-recog_sf    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)MHC_I (PF00129)   
Domain families : Pfam (NCBI)pfam00129   
Conserved Domain (NCBI)RAET1L
DMDM Disease mutations154064
Blocks (Seattle)RAET1L
PDB (SRS)4S0U   
PDB (PDBSum)4S0U   
PDB (IMB)4S0U   
PDB (RSDB)4S0U   
Structural Biology KnowledgeBase4S0U   
SCOP (Structural Classification of Proteins)4S0U   
CATH (Classification of proteins structures)4S0U   
SuperfamilyQ5VY80
Human Protein Atlas [tissue]ENSG00000155918-RAET1L [tissue]
Peptide AtlasQ5VY80
HPRD17949
IPIIPI00152655   
Protein Interaction databases
DIP (DOE-UCLA)Q5VY80
IntAct (EBI)Q5VY80
FunCoupENSG00000155918
BioGRIDRAET1L
STRING (EMBL)RAET1L
ZODIACRAET1L
Ontologies - Pathways
QuickGOQ5VY80
Ontology : AmiGOT cell mediated cytotoxicity  protein binding  extracellular region  endoplasmic reticulum  plasma membrane  plasma membrane  immune response  viral process  natural killer cell activation  anchored component of membrane  natural killer cell mediated cytotoxicity  susceptibility to natural killer cell mediated cytotoxicity  natural killer cell lectin-like receptor binding  
Ontology : EGO-EBIT cell mediated cytotoxicity  protein binding  extracellular region  endoplasmic reticulum  plasma membrane  plasma membrane  immune response  viral process  natural killer cell activation  anchored component of membrane  natural killer cell mediated cytotoxicity  susceptibility to natural killer cell mediated cytotoxicity  natural killer cell lectin-like receptor binding  
Pathways : KEGGNatural killer cell mediated cytotoxicity   
NDEx NetworkRAET1L
Atlas of Cancer Signalling NetworkRAET1L
Wikipedia pathwaysRAET1L
Orthology - Evolution
OrthoDB154064
GeneTree (enSembl)ENSG00000155918
Phylogenetic Trees/Animal Genes : TreeFamRAET1L
HOVERGENQ5VY80
HOGENOMQ5VY80
Homologs : HomoloGeneRAET1L
Homology/Alignments : Family Browser (UCSC)RAET1L
Gene fusions - Rearrangements
Fusion : QuiverRAET1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAET1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAET1L
dbVarRAET1L
ClinVarRAET1L
1000_GenomesRAET1L 
Exome Variant ServerRAET1L
ExAC (Exome Aggregation Consortium)ENSG00000155918
GNOMAD BrowserENSG00000155918
Varsome BrowserRAET1L
Genetic variants : HAPMAP154064
Genomic Variants (DGV)RAET1L [DGVbeta]
DECIPHERRAET1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAET1L 
Mutations
ICGC Data PortalRAET1L 
TCGA Data PortalRAET1L 
Broad Tumor PortalRAET1L
OASIS PortalRAET1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAET1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAET1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAET1L
DgiDB (Drug Gene Interaction Database)RAET1L
DoCM (Curated mutations)RAET1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAET1L (select a term)
intoGenRAET1L
Cancer3DRAET1L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611047   
Orphanet
DisGeNETRAET1L
MedgenRAET1L
Genetic Testing Registry RAET1L
NextProtQ5VY80 [Medical]
TSGene154064
GENETestsRAET1L
Target ValidationRAET1L
Huge Navigator RAET1L [HugePedia]
snp3D : Map Gene to Disease154064
BioCentury BCIQRAET1L
ClinGenRAET1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154064
Chemical/Pharm GKB GenePA134918665
Clinical trialRAET1L
Miscellaneous
canSAR (ICR)RAET1L (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAET1L
EVEXRAET1L
GoPubMedRAET1L
iHOPRAET1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:34:19 CET 2018

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